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| author |   David Seifert <soap@gentoo.org> | 2021-04-05 16:14:41 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2021-04-05 16:14:41 +0200 |
| commit | 17ca0e1b3b8cda81f6028b21303d8c64021c2947 (patch) | |
| tree | 4503b8d05aa5725e20ed425c99193947a5884130 /sci-biology | |
| parent | sci-biology/raxml: Port to EAPI 7 (diff) | |
| download | gentoo-17ca0e1b3b8cda81f6028b21303d8c64021c2947.tar.gz gentoo-17ca0e1b3b8cda81f6028b21303d8c64021c2947.tar.bz2 gentoo-17ca0e1b3b8cda81f6028b21303d8c64021c2947.zip | |
sci-biology/mothur: Port to EAPI 7
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/mothur/mothur-1.27.0-r1.ebuild | 35 |
1 files changed, 17 insertions, 18 deletions
diff --git a/sci-biology/mothur/mothur-1.27.0-r1.ebuild b/sci-biology/mothur/mothur-1.27.0-r1.ebuild index 9e9bf2160310..12b628475aac 100644 --- a/sci-biology/mothur/mothur-1.27.0-r1.ebuild +++ b/sci-biology/mothur/mothur-1.27.0-r1.ebuild @@ -1,43 +1,42 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit eutils flag-o-matic fortran-2 toolchain-funcs +inherit flag-o-matic fortran-2 toolchain-funcs DESCRIPTION="A suite of algorithms for ecological bioinformatics" HOMEPAGE="https://www.mothur.org/" SRC_URI="https://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip" +S="${WORKDIR}/${PN^}.source" LICENSE="GPL-3" SLOT="0" -IUSE="mpi +readline" KEYWORDS="amd64 x86" +IUSE="mpi +readline" RDEPEND=" sci-biology/uchime mpi? ( virtual/mpi )" -DEPEND="${RDEPEND} - app-arch/unzip" +DEPEND="${RDEPEND}" +BDEPEND="app-arch/unzip" -S=${WORKDIR}/Mothur.source +PATCHES=( + "${FILESDIR}"/${P}-makefile.patch + "${FILESDIR}"/${P}-overflows.patch +) -pkg_setup() { - fortran-2_pkg_setup - use mpi && export CXX=mpicxx || export CXX=$(tc-getCXX) +src_configure() { + use mpi && export CXX=mpicxx || tc-export CXX use amd64 && append-cppflags -DBIT_VERSION } -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-makefile.patch \ - "${FILESDIR}"/${P}-overflows.patch -} - src_compile() { - emake USEMPI=$(usex mpi) USEREADLINE=$(usex readline) + emake \ + USEMPI=$(usex mpi) \ + USEREADLINE=$(usex readline) } src_install() { - dobin ${PN} + dobin mothur } |