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| -rw-r--r-- | sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild | 67 |
1 files changed, 0 insertions, 67 deletions
diff --git a/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild b/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild deleted file mode 100644 index 066654dcfb92..000000000000 --- a/sci-biology/wgs-assembler/wgs-assembler-7.0-r1.ebuild +++ /dev/null @@ -1,67 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=4 - -inherit eutils toolchain-funcs - -DESCRIPTION="The Celera de novo whole-genome shotgun DNA sequence assembler, aka CABOG" -HOMEPAGE="https://sourceforge.net/projects/wgs-assembler/" -SRC_URI="mirror://sourceforge/${PN}/wgs-${PV}.tar.bz2" - -LICENSE="GPL-2" -SLOT="0" -KEYWORDS="amd64 x86" -IUSE="static-libs" - -DEPEND=" - x11-libs/libXt - !x11-terms/terminator" -RDEPEND="${DEPEND} - app-shells/tcsh - dev-perl/Log-Log4perl" - -S="${WORKDIR}/wgs-${PV}" - -src_prepare() { - epatch \ - "${FILESDIR}"/${P}-build.patch - tc-export CC CXX -} - -src_configure() { - cd "${S}/kmer" - ./configure.sh || die -} - -src_compile() { - # not really an install target - emake -C kmer -j1 install - emake -C src -j1 SITE_NAME=LOCAL -} - -src_install() { - OSTYPE=$(uname) - MACHTYPE=$(uname -m) - MACHTYPE=${MACHTYPE/x86_64/amd64} - MY_S="${OSTYPE}-${MACHTYPE}" - sed -i 's|#!/usr/local/bin/|#!/usr/bin/env |' $(find $MY_S -type f) || die - - sed -i '/sub getBinDirectory ()/ a return "/usr/bin";' ${MY_S}/bin/runCA* || die - sed -i '/sub getBinDirectoryShellCode ()/ a return "bin=/usr/bin\n";' ${MY_S}/bin/runCA* || die - sed -i '1 a use lib "/usr/share/'${PN}'/lib";' $(find $MY_S -name '*.p*') || die - - dobin kmer/${MY_S}/bin/* - insinto /usr/$(get_libdir)/${PN} - use static-libs && doins kmer/${MY_S}/lib/* - - insinto /usr/include/${PN} - doins kmer/${MY_S}/include/* - - insinto /usr/share/${PN}/lib - doins -r ${MY_S}/bin/TIGR - rm -rf ${MY_S}/bin/TIGR || die - dobin ${MY_S}/bin/* - use static-libs && dolib.a ${MY_S}/lib/* - dodoc README -} |