diff options
Diffstat (limited to 'sci-biology/bowtie/files')
| -rw-r--r-- | sci-biology/bowtie/files/bowtie-0.12.8-gcc-47.patch | 45 |
1 files changed, 0 insertions, 45 deletions
diff --git a/sci-biology/bowtie/files/bowtie-0.12.8-gcc-47.patch b/sci-biology/bowtie/files/bowtie-0.12.8-gcc-47.patch deleted file mode 100644 index 3c8a1e1d9ca4..000000000000 --- a/sci-biology/bowtie/files/bowtie-0.12.8-gcc-47.patch +++ /dev/null @@ -1,45 +0,0 @@ - alphabet.h | 24 ++++++++++++------------ - 1 files changed, 12 insertions(+), 12 deletions(-) - -diff --git a/alphabet.h b/alphabet.h -index b464ddf..08d0281 100644 ---- a/alphabet.h -+++ b/alphabet.h -@@ -38,6 +38,18 @@ static inline TStr reverseComplement(const TStr& s, bool color) { - return s_rc; - } - -+/// Reverse a string in-place -+template <typename TStr> -+static inline void reverseInPlace(TStr& s) { -+ typedef typename Value<TStr>::Type TVal; -+ size_t len = length(s); -+ for(size_t i = 0; i < (len>>1); i++) { -+ TVal tmp = s[i]; -+ s[i] = s[len-i-1]; -+ s[len-i-1] = tmp; -+ } -+} -+ - /** - * Reverse-complement s in-place. Ns go to Ns. - */ -@@ -69,18 +81,6 @@ static inline void reverseComplementInPlace(TStr& s, bool color) { - } - } - --/// Reverse a string in-place --template <typename TStr> --static inline void reverseInPlace(TStr& s) { -- typedef typename Value<TStr>::Type TVal; -- size_t len = length(s); -- for(size_t i = 0; i < (len>>1); i++) { -- TVal tmp = s[i]; -- s[i] = s[len-i-1]; -- s[len-i-1] = tmp; -- } --} -- - /** - * Return the reverse-complement of s. - */ |