diff options
Diffstat (limited to 'sci-biology/cufflinks/files/cufflinks-1.3.0-autotools.patch')
| -rw-r--r-- | sci-biology/cufflinks/files/cufflinks-1.3.0-autotools.patch | 38 |
1 files changed, 38 insertions, 0 deletions
diff --git a/sci-biology/cufflinks/files/cufflinks-1.3.0-autotools.patch b/sci-biology/cufflinks/files/cufflinks-1.3.0-autotools.patch new file mode 100644 index 000000000000..73e52b4343a0 --- /dev/null +++ b/sci-biology/cufflinks/files/cufflinks-1.3.0-autotools.patch @@ -0,0 +1,38 @@ +--- a/configure.ac ++++ b/configure.ac +@@ -27,6 +27,7 @@ AC_PROG_AWK + AC_PROG_CXX + AC_PROG_CC + AC_PROG_MAKE_SET ++AM_PROG_AR + AC_PROG_RANLIB + AC_PROG_INSTALL + AM_PATH_PYTHON([2.4]) +@@ -54,7 +55,7 @@ AC_CANONICAL_HOST + + # set CFLAGS and CXXFLAGS + user_CFLAGS=${CFLAGS} +-generic_CFLAGS="-Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized" ++generic_CFLAGS="-Wall -Wno-strict-aliasing -Wuninitialized" + ext_CFLAGS="" + debug_CFLAGS="" + #echo "${host_cpu}-${host_os}" +@@ -99,15 +100,15 @@ AC_ARG_ENABLE(profiling, [ --enable-profiling enable profiling with + [ext_LDFLAGS="-lprofiler -ltcmalloc"], []) + + CFLAGS="${generic_CFLAGS} ${ext_CFLAGS} ${user_CFLAGS} ${debug_CFLAGS} ${OPENMP_CFLAGS}" +-CXXFLAGS="$CFLAGS" ++CXXFLAGS="$CXXFLAGS" + CXXFLAGS="$CXXFLAGS $BOOST_CPPFLAGS $BAM_CPPFLAGS" +-LDFLAGS="$ext_LDFLAGS" ++LDFLAGS="$LDFLAGS $ext_LDFLAGS" + + # Checks for structures/functions that can be used to determine system memory + AC_CHECK_MEMBERS([struct sysinfo.totalram], [], [], [#include <sys/sysinfo.h>]) + AC_CHECK_DECLS([sysctl, CTL_HW, HW_PHYSMEM], [], [], [#include <sys/sysctl.h>]) + +-AM_INIT_AUTOMAKE([-Wall -Werror tar-pax foreign]) ++AM_INIT_AUTOMAKE([-Wall tar-pax foreign subdir-objects]) + + AC_CONFIG_FILES([Makefile + src/Makefile]) |