diff options
Diffstat (limited to 'sci-biology/meme/files/meme-4.8.1-Makefile.am.patch')
| -rw-r--r-- | sci-biology/meme/files/meme-4.8.1-Makefile.am.patch | 134 |
1 files changed, 134 insertions, 0 deletions
diff --git a/sci-biology/meme/files/meme-4.8.1-Makefile.am.patch b/sci-biology/meme/files/meme-4.8.1-Makefile.am.patch new file mode 100644 index 000000000000..e84006295735 --- /dev/null +++ b/sci-biology/meme/files/meme-4.8.1-Makefile.am.patch @@ -0,0 +1,134 @@ + Makefile.am | 6 +++--- + doc/Makefile.am | 2 +- + doc/examples/Makefile.am | 24 +++++++++++----------- + .../Makefile.am | 2 +- + doc/examples/sample_opal_scripts/Makefile.am | 2 +- + doc/images/Makefile.am | 2 +- + scripts/Makefile.am | 2 +- + 7 files changed, 20 insertions(+), 20 deletions(-) + +diff --git a/Makefile.am b/Makefile.am +index 4a69e34..842e33f 100644 +--- a/Makefile.am ++++ b/Makefile.am +@@ -18,11 +18,11 @@ ARCHIVE_REVISION: + install-data-hook: dbdir + + dbdir: +- mkdir -p $(MEME_DB) ++ mkdir -p $(DESTDIR)$(MEME_DB) + + install-data-local: +- mkdir -p $(MEME_LOGS) +- chmod a+w $(MEME_LOGS) ++ mkdir -p $(DESTDIR)$(MEME_LOGS) ++ chmod a+w $(DESTDIR)$(MEME_LOGS) + + distdir = $(PACKAGE)_$(VERSION) + +diff --git a/doc/Makefile.am b/doc/Makefile.am +index e0d6af9..e7bcb4f 100644 +--- a/doc/Makefile.am ++++ b/doc/Makefile.am +@@ -202,7 +202,7 @@ COMMON_DOC = \ + if WEBSITE + MEME_DOC_DIR = $(WEBDIR)/doc + else +-MEME_DOC_DIR = $(prefix)/doc ++MEME_DOC_DIR = $(docdir)/html + endif + + memedocdir = $(MEME_DOC_DIR) +diff --git a/doc/examples/Makefile.am b/doc/examples/Makefile.am +index 12970b5..633492c 100644 +--- a/doc/examples/Makefile.am ++++ b/doc/examples/Makefile.am +@@ -51,24 +51,24 @@ if WEBSITE + exdir = $(WEBDIR)/examples + other_exdir = $(WEBDIR)/doc/examples + else +-exdir = $(prefix)/doc/examples ++exdir = $(prefix)/share/meme/examples + other_exdir = $(exdir) + endif + + ex_DATA = $(EXAMPLES) + + install-data-hook: +- tar xzvf centrimo_example_output_files.tgz -C $(other_exdir) +- tar xzvf dreme_example_output_files.tgz -C $(other_exdir) +- tar xzvf fimo_example_output_files.tgz -C $(other_exdir) +- tar xzvf glam2_example_output_files.tgz -C $(other_exdir) +- tar xzvf glam2scan_example_output_files.tgz -C $(other_exdir) +- tar xzvf mast_example_output_files.tgz -C $(other_exdir) +- tar xzvf mcast_example_output_files.tgz -C $(other_exdir) +- tar xzvf meme_example_output_files.tgz -C $(other_exdir) +- tar xzvf memechip_example_output_files.tgz -C $(other_exdir) +- tar xzvf spamo_example_output_files.tgz -C $(other_exdir) +- tar xzvf tomtom_example_output_files.tgz -C $(other_exdir) ++ tar xzvf centrimo_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf dreme_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf fimo_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf glam2_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf glam2scan_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf mast_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf mcast_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf meme_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf memechip_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf spamo_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) ++ tar xzvf tomtom_example_output_files.tgz -C $(DESTDIR)/$(other_exdir) + + # If .svnignore file doesn't exist + # create an empty one +diff --git a/doc/examples/compute_prior_dist_example_output_files/Makefile.am b/doc/examples/compute_prior_dist_example_output_files/Makefile.am +index 747028d..a358f58 100644 +--- a/doc/examples/compute_prior_dist_example_output_files/Makefile.am ++++ b/doc/examples/compute_prior_dist_example_output_files/Makefile.am +@@ -22,7 +22,7 @@ EXAMPLES = \ + if WEBSITE + exdir = $(WEBDIR)/doc/examples/compute_prior_dist_example_output_files + else +-exdir = $(prefix)/doc/examples/compute_prior_dist_example_output_files ++exdir = $(prefix)/share/meme/examples/compute_prior_dist_example_output_files + endif + + ex_DATA = $(EXAMPLES) +diff --git a/doc/examples/sample_opal_scripts/Makefile.am b/doc/examples/sample_opal_scripts/Makefile.am +index 3a638b3..30925bb 100644 +--- a/doc/examples/sample_opal_scripts/Makefile.am ++++ b/doc/examples/sample_opal_scripts/Makefile.am +@@ -18,7 +18,7 @@ EXAMPLES = \ + if WEBSITE + exdir = $(WEBDIR)/doc/examples/sample_opal_scripts + else +-exdir = $(prefix)/doc/examples/sample_opal_scripts ++exdir = $(prefix)/share/meme/examples/sample_opal_scripts + endif + + ex_DATA = $(EXAMPLES) +diff --git a/doc/images/Makefile.am b/doc/images/Makefile.am +index c879621..a4696cd 100644 +--- a/doc/images/Makefile.am ++++ b/doc/images/Makefile.am +@@ -28,7 +28,7 @@ MEME_IMAGES = \ + if WEBSITE + memeimgdir = $(WEBDIR)/doc/images + else +-memeimgdir = $(prefix)/doc/images ++memeimgdir = $(docdir)/html/images + endif + + memeimg_DATA = $(MEME_IMAGES) +diff --git a/scripts/Makefile.am b/scripts/Makefile.am +index 4143e46..8a5c021 100644 +--- a/scripts/Makefile.am ++++ b/scripts/Makefile.am +@@ -8,7 +8,7 @@ + if WEBSITE + MEME_DOC_DIR = $(WEBDIR)/doc + else +-MEME_DOC_DIR = $(prefix)/doc ++MEME_DOC_DIR = $(docdir) + endif + + ARCHIVE_REVISION = $(shell cat ../ARCHIVE_REVISION) |