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Diffstat (limited to 'sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch')
-rw-r--r--sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch107
1 files changed, 0 insertions, 107 deletions
diff --git a/sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch b/sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch
deleted file mode 100644
index da17240642d7..000000000000
--- a/sci-chemistry/balbes/files/1.0.0_p100317-makefile.patch
+++ /dev/null
@@ -1,107 +0,0 @@
-diff --git a/makefile b/makefile
-index baaceb5..85a7baf 100755
---- a/makefile
-+++ b/makefile
-@@ -70,6 +70,15 @@ OBJDB_G = get_pdb_list.o
-
- #OBJDB_Z = blanc2mtz.o libutils.o
-
-+# incomplete targets:
-+# dimer_search_db domain_search_db domain align3
-+all: search_db get_structure_db manage_db search_dm dom2ch \
-+ save_si get_pdb_list_db update_db \
-+ update_dom_db bl2mtz check_file_db fobs2cif sol_check \
-+ get_trns p2s check_cell alt_sg \
-+ align cell_list create_bins \
-+ get_pdb_list_db get_ch get_nm get_mod
-+
- search_db: sdb_l
-
- get_structure_db: tdb_l
-@@ -201,58 +210,58 @@ save_seg_id.o: save_seg_id.f
- $(BLANC_FORT) -c save_seg_id.f
-
- sdb_l: $(OBJDB_S)
-- $(BLANC_FORT) -o ../bin/search_DB $(OBJDB_S)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/search_DB $(OBJDB_S)
- tdb_l: $(OBJDB_T)
-- $(BLANC_FORT) -o ../bin/get_structure_DB $(OBJDB_T)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_structure_DB $(OBJDB_T)
- mdb_l: $(OBJDB_M)
-- $(BLANC_FORT) -o ../bin/manage_DB $(OBJDB_M)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/manage_DB $(OBJDB_M)
- mdm_l: $(OBJDB_MD)
-- $(BLANC_FORT) -o ../bin/search_DOM $(OBJDB_MD)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/search_DOM $(OBJDB_MD)
- d2c_l: $(OBJDB_A)
-- $(BLANC_FORT) -o ../bin/domain2chain $(OBJDB_A)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/domain2chain $(OBJDB_A)
- upd_l: $(OBJDB_U)
-- $(BLANC_FORT) -o ../bin/update_DB $(OBJDB_U)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/update_DB $(OBJDB_U)
- dom_l: $(OBJDB_V)
-- $(BLANC_FORT) -o ../bin/update_domain_DB $(OBJDB_V)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/update_domain_DB $(OBJDB_V)
- ddb_l: $(OBJDB_D)
-- $(BLANC_FORT) -o ../bin/dimer_search $(OBJDB_D)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/dimer_search $(OBJDB_D)
- dmdb_l: $(OBJDB_N)
-- $(BLANC_FORT) -o ../bin/domain_search $(OBJDB_N)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/domain_search $(OBJDB_N)
- gdb_l: $(OBJDB_G)
-- $(BLANC_FORT) -o ../bin/get_pdb_list $(OBJDB_G)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_pdb_list $(OBJDB_G)
- b2m_l: blanc2mtz.o libutils.o
-- $(BLANC_FORT) -o ../bin/blanc2mtz blanc2mtz.o libutils.o $(CLIB)/libccp4f.a $(CLIB)/libccp4c.a
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/blanc2mtz blanc2mtz.o libutils.o -lccp4f -lccp4c
- f2c_l: f2cif.o libutils.o
-- $(BLANC_FORT) -o ../bin/f2cif f2cif.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/f2cif f2cif.o libutils.o
- chf_l: check_file_DB.o libutils.o
-- $(BLANC_FORT) -o ../bin/check_file_DB check_file_DB.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/check_file_DB check_file_DB.o libutils.o
- chc_l: check_cell_sg.o libutils.o
-- $(BLANC_FORT) -o ../bin/check_cell_sg check_cell_sg.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/check_cell_sg check_cell_sg.o libutils.o
- asl_l: alt_sg_list.o libutils.o
-- $(BLANC_FORT) -o ../bin/alt_sg_list alt_sg_list.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/alt_sg_list alt_sg_list.o libutils.o
- sc_l: $(OBJDB_C)
-- $(BLANC_FORT) -o ../bin/solution_check $(OBJDB_C)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/solution_check $(OBJDB_C)
- gt_l: $(OBJDB_R)
-- $(BLANC_FORT) -o ../bin/get_trans $(OBJDB_R)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_trans $(OBJDB_R)
- dmn_l: domain.o libutils.o
-- $(BLANC_FORT) -o ../bin/domain domain.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/domain domain.o libutils.o
- pack: pdb_pack.o libutils.o
-- $(BLANC_FORT) -o ../bin/pdb_pack pdb_pack.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/pdb_pack pdb_pack.o libutils.o
- p2s_l: $(OBJDB_P)
-- $(BLANC_FORT) -o ../bin/pdb2s $(OBJDB_P)
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/pdb2s $(OBJDB_P)
- aln_l: align_DB.o DB_subr.o libutils.o
-- $(BLANC_FORT) -o ../bin/align_DB align_DB.o DB_subr.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/align_DB align_DB.o DB_subr.o libutils.o
- aln3_l: align_DB_new.o DB_subr.o libutils.o
-- $(BLANC_FORT) -o ../bin/align_DB_new align_DB_new.o DB_subr.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/align_DB_new align_DB_new.o DB_subr.o libutils.o
- cell_l: create_cell_list.o DB_subr.o libutils.o
-- $(BLANC_FORT) -o ../bin/create_cell_list create_cell_list.o DB_subr.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/create_cell_list create_cell_list.o DB_subr.o libutils.o
- getch_l: get_chain.o DB_subr.o libutils.o
-- $(BLANC_FORT) -o ../bin/get_chain get_chain.o DB_subr.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_chain get_chain.o DB_subr.o libutils.o
- getnmr_l: get_nmr.o DB_subr.o libutils.o
-- $(BLANC_FORT) -o ../bin/get_nmr get_nmr.o DB_subr.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_nmr get_nmr.o DB_subr.o libutils.o
- getmod_l: get_model.o libutils.o
-- $(BLANC_FORT) -o ../bin/get_model get_model.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/get_model get_model.o libutils.o
- crb_l: create_binaries.o DB_subr.o libutils.o
-- $(BLANC_FORT) -o ../bin/create_binaries create_binaries.o DB_subr.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/create_binaries create_binaries.o DB_subr.o libutils.o
- save_si_l: save_seg_id.o DB_subr.o libutils.o
-- $(BLANC_FORT) -o ../bin/save_seg_id save_seg_id.o DB_subr.o libutils.o
-+ $(BLANC_FORT) ${LDFLAGS} -o ../bin/save_seg_id save_seg_id.o DB_subr.o libutils.o