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Diffstat (limited to 'sci-chemistry/ccp4-apps/files/6.1.3-rename-rapper-ng.patch')
-rw-r--r--sci-chemistry/ccp4-apps/files/6.1.3-rename-rapper-ng.patch60
1 files changed, 0 insertions, 60 deletions
diff --git a/sci-chemistry/ccp4-apps/files/6.1.3-rename-rapper-ng.patch b/sci-chemistry/ccp4-apps/files/6.1.3-rename-rapper-ng.patch
deleted file mode 100644
index a5144cfa5d33..000000000000
--- a/sci-chemistry/ccp4-apps/files/6.1.3-rename-rapper-ng.patch
+++ /dev/null
@@ -1,60 +0,0 @@
-diff --git a/src/Makefile.in b/src/Makefile.in
-index 70781f3..b2dcc25 100755
---- a/src/Makefile.in
-+++ b/src/Makefile.in
-@@ -760,7 +760,7 @@ chainsawobjs = chainsaw.o
- pdbcur : $(pdbcurobjs)
- @$(SETFLAGS) ; rm -f pdbcur; eval $(CXX) $${mmdb_app_FLAGS-"$(CXXFLAGS)"} -o pdbcur $(pdbcurobjs) $(LDCXXFLAGS)
- ncont : $(ncontobjs)
-- @$(SETFLAGS) ; rm -f ncont; eval $(CXX) $${mmdb_app_FLAGS-"$(CXXFLAGS)"} -o ncont $(ncontobjs) $(LDCXXFLAGS)
-+ @$(SETFLAGS) ; rm -f ncont; eval $(CXX) $${mmdb_app_FLAGS-"$(CXXFLAGS)"} -o ncont $(ncontobjs) $(LDCXXFLAGS) -lmmdb
- coord_format : $(coord_formatobjs)
- @$(SETFLAGS) xxx=1 ; \
- rm -f coord_format; \
-diff --git a/src/rapper/LOOP/Makefile.am b/src/rapper/LOOP/Makefile.am
-index 85f212e..2608c6d 100755
---- a/src/rapper/LOOP/Makefile.am
-+++ b/src/rapper/LOOP/Makefile.am
-@@ -15,12 +15,12 @@ params.cpp typed_value.cpp misc.cpp residue.cpp atom.cpp psa.cpp edm_sidechains.
- hash_table.cpp surface.cpp parse.cpp band.cpp edensity.cpp read_map.cpp iterator.cpp \
- residue_range.cpp pop_search_frags.cpp saxs.cpp lib_choral.cpp pdf.cpp WeightedDistribMean.cpp
-
--rapper_LDADD = ../gc7.0/libgc.la ../libxml2/libxml2.la
-+rapper_LDADD = @GC_LIBS@ @LIBXML_LIBS@
-
- pkgdatadir = $(datadir)/rapper
- dist_pkgdata_DATA = params.xml
-
--INCLUDES = -I. -I../gc7.0/include -I../libxml2/include
-+INCLUDES = -I. @LIBXML_CFLAGS@ @GC_CFLAGS@
- #SUBDIRS = \
- #@PYTHON_USE_TRUE@ python
-
-diff --git a/src/rapper/Makefile.am b/src/rapper/Makefile.am
-index e78b10d..486b931 100755
---- a/src/rapper/Makefile.am
-+++ b/src/rapper/Makefile.am
-@@ -1,3 +1,3 @@
--SUBDIRS = libxml2 gc7.0 LOOP data
-+SUBDIRS = LOOP data
-
- EXTRA_DIST =
-diff --git a/src/rapper/configure.ac b/src/rapper/configure.ac
-index 5e4ef69..268a579 100755
---- a/src/rapper/configure.ac
-+++ b/src/rapper/configure.ac
-@@ -48,6 +48,13 @@ AM_CONDITIONAL(AMDEP, test "x$enable_dependency_tracking" != xno)
-
- AC_SUBST(rapper_LDFLAGS)
-
--AC_CONFIG_SUBDIRS([gc7.0 libxml2])
-+PKG_CHECK_MODULES([LIBXML],[libxml-2.0])
-+AC_SUBST([LIBXML_CFLAGS])
-+AC_SUBST([LIBXML_LIBS])
-+
-+PKG_CHECK_MODULES([GC],[bdw-gc])
-+AC_SUBST([GC_CFLAGS])
-+AC_SUBST([GC_LIBS])
-+
- #AC_OUTPUT(Makefile LOOP/Makefile LOOP/python/Makefile data/Makefile)
- AC_OUTPUT(Makefile LOOP/Makefile data/Makefile)