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Diffstat (limited to 'sci-chemistry/coot/coot-0.7.2.ebuild')
-rw-r--r--sci-chemistry/coot/coot-0.7.2.ebuild165
1 files changed, 0 insertions, 165 deletions
diff --git a/sci-chemistry/coot/coot-0.7.2.ebuild b/sci-chemistry/coot/coot-0.7.2.ebuild
deleted file mode 100644
index 0e14d4464539..000000000000
--- a/sci-chemistry/coot/coot-0.7.2.ebuild
+++ /dev/null
@@ -1,165 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-AUTOTOOLS_AUTORECONF="true"
-
-inherit autotools-utils python-single-r1 toolchain-funcs versionator
-
-MY_S2_PV=$(replace_version_separator 2 - ${PV})
-MY_S2_P=${PN}-${MY_S2_PV/pre1/pre-1}
-MY_S_P=${MY_S2_P}-${PR/r/revision-}
-MY_PV=${PV}
-MY_P=${PN}-${MY_PV}
-
-DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
-HOMEPAGE="http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/"
-SRC_URI="
- http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/source/releases/${MY_P}.tar.gz
- test? ( https://dev.gentoo.org/~jlec/distfiles/greg-data-${PV}.tar.gz )"
-
-SLOT="0"
-LICENSE="GPL-3"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
-IUSE="+openmp static-libs test"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-AUTOTOOLS_IN_SOURCE_BUILD=1
-
-SCIDEPS="
- >=sci-libs/ccp4-libs-6.1
- sci-libs/clipper
- >=sci-libs/coot-data-2
- >=sci-libs/gsl-1.3
- >=sci-libs/mmdb-1.23:0
- sci-libs/ssm
- sci-libs/monomer-db
- sci-chemistry/reduce
- sci-chemistry/refmac
- sci-chemistry/probe"
-
-XDEPS="
- gnome-base/libgnomecanvas
- gnome-base/librsvg:2
- media-libs/libpng
- media-libs/freeglut
- x11-libs/gtk+:2
- x11-libs/goocanvas:0
- x11-libs/gtkglext"
-
-SCHEMEDEPS="
- dev-scheme/net-http
- dev-scheme/guile-gui
- >=dev-scheme/guile-lib-0.1.6
- dev-scheme/guile-www
- >=x11-libs/guile-gtk-2.1"
-
-RDEPEND="
- ${SCIDEPS}
- ${XDEPS}
- ${SCHEMEDEPS}
- ${PYTHON_DEPS}
- dev-python/pygtk:2[${PYTHON_USEDEP}]
- >=dev-libs/gmp-4.2.2-r2
- >=net-misc/curl-7.19.6
- net-dns/libidn"
-DEPEND="${RDEPEND}
- >=sys-devel/libtool-2.4-r2
- dev-lang/swig
- sys-devel/bc
- test? ( dev-scheme/greg )"
-
-S="${WORKDIR}/${MY_P}"
-
-pkg_setup() {
- if use openmp; then
- tc-has-openmp || die "Please use an OPENMP capable compiler"
- fi
- python-single-r1_pkg_setup
-}
-
-PATCHES=(
- "${FILESDIR}"/${PN}-0.7-clipper-config.patch
- "${FILESDIR}"/${PN}-0.7-goocanvas.patch
- "${FILESDIR}"/${PN}-0.7-mmdb-config.patch
- )
-
-src_prepare() {
- sed \
- -e "s:AM_COOT_SYS_BUILD_TYPE:COOT_SYS_BUILD_TYPE=Gentoo-Linux-${EPYTHON}-gtk2 ; AC_MSG_RESULT([\$COOT_SYS_BUILD_TYPE]); AC_SUBST(COOT_SYS_BUILD_TYPE):g" \
- -i configure.in || die
-
- autotools-utils_src_prepare
-}
-
-src_configure() {
- # All the --with's are used to activate various parts.
- # Yes, this is broken behavior.
- local myeconfargs=(
- --includedir='${prefix}/include/coot'
- --with-goocanvas-prefix="${EPREFIX}/usr"
- --with-guile
- --with-python="${EPREFIX}/usr"
- --with-guile-gtk
- --with-gtk2
- --with-pygtk
- $(use_enable openmp)
- )
- autotools-utils_src_configure
-}
-
-src_compile() {
- autotools-utils_src_compile
- cp "${S}"/src/coot_gtk2.py python/coot.py || die
-}
-
-src_test() {
- source "${EPREFIX}/etc/profile.d/40ccp4.setup.sh"
- mkdir "${T}"/coot_test
-
- export COOT_STANDARD_RESIDUES="${S}/standard-residues.pdb"
- export COOT_SCHEME_DIR="${S}/scheme/"
- export COOT_RESOURCES_FILE="${S}/cootrc"
- export COOT_PIXMAPS_DIR="${S}/pixmaps/"
- export COOT_DATA_DIR="${S}/"
- export COOT_PYTHON_DIR="${S}/python/"
- export PYTHONPATH="${COOT_PYTHON_DIR}:${PYTHONPATH}"
- export PYTHONHOME="${EPREFIX}"/usr/
- export CCP4_SCR="${T}"/coot_test/
- export CLIBD_MON="${EPREFIX}/usr/share/ccp4/data/monomers/"
- export SYMINFO="${S}/syminfo.lib"
-
- export COOT_TEST_DATA_DIR="${WORKDIR}"/greg-data
-
- cat > command-line-greg.scm <<- EOF
- (use-modules (ice-9 greg))
- (set! greg-tools (list "greg-tests"))
- (set! greg-debug #t)
- (set! greg-verbose 5)
- (let ((r (greg-test-run)))
- (if r
- (coot-real-exit 0)
- (coot-real-exit 1)))
- EOF
-
- einfo "Running test with following paths ..."
- einfo "COOT_STANDARD_RESIDUES $COOT_STANDARD_RESIDUES"
- einfo "COOT_SCHEME_DIR $COOT_SCHEME_DIR"
- einfo "COOT_RESOURCES_FILE $COOT_RESOURCES_FILE"
- einfo "COOT_PIXMAPS_DIR $COOT_PIXMAPS_DIR"
- einfo "COOT_DATA_DIR $COOT_DATA_DIR"
- einfo "COOT_PYTHON_DIR $COOT_PYTHON_DIR"
- einfo "PYTHONPATH $PYTHONPATH"
- einfo "PYTHONHOME $PYTHONHOME"
- einfo "CCP4_SCR ${CCP4_SCR}"
- einfo "CLIBD_MON ${CLIBD_MON}"
- einfo "SYMINFO ${SYMINFO}"
-
- "${S}"/src/coot-real --no-graphics --script command-line-greg.scm || die
- "${S}"/src/coot-real --no-graphics --script python-tests/coot_unittest.py || die
-}