summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
Diffstat (limited to 'sci-chemistry/xia2')
-rw-r--r--sci-chemistry/xia2/Manifest6
-rw-r--r--sci-chemistry/xia2/files/0.3.1.0-fix-syntax.patch61
-rw-r--r--sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch61
-rw-r--r--sci-chemistry/xia2/files/0.3.1.7-fix-syntax.patch61
-rw-r--r--sci-chemistry/xia2/files/0.3.3.1-fix-syntax.patch61
-rw-r--r--sci-chemistry/xia2/files/0.3.3.3-fix-syntax.patch28
-rw-r--r--sci-chemistry/xia2/files/0.3.4.0-fix-syntax.patch28
-rw-r--r--sci-chemistry/xia2/metadata.xml5
-rw-r--r--sci-chemistry/xia2/xia2-0.3.1.0.ebuild59
-rw-r--r--sci-chemistry/xia2/xia2-0.3.1.6.ebuild66
-rw-r--r--sci-chemistry/xia2/xia2-0.3.1.7.ebuild66
-rw-r--r--sci-chemistry/xia2/xia2-0.3.3.1.ebuild70
-rw-r--r--sci-chemistry/xia2/xia2-0.3.3.3.ebuild70
-rw-r--r--sci-chemistry/xia2/xia2-0.3.4.0.ebuild70
14 files changed, 0 insertions, 712 deletions
diff --git a/sci-chemistry/xia2/Manifest b/sci-chemistry/xia2/Manifest
deleted file mode 100644
index 52cb6c13f104..000000000000
--- a/sci-chemistry/xia2/Manifest
+++ /dev/null
@@ -1,6 +0,0 @@
-DIST xia2-0.3.1.0.tar.bz2 3389906 SHA256 32f1866bc17b093cbf157ec7bc217e47d059957104b20c88ed1b5c3706fc7e28 SHA512 cd595147164e4a281431a1d5a7298588001bb11662b517a5f95366e7b0ba4fdb33adf88dd2672c8c2ee84f48356fccb7cbd07667d5f04417a1564c7ea9f878c5 WHIRLPOOL e5493526d3075a5c61ce582a3bf42e2b4a2a73d7a28b1c8df786f0bdf5c8b1eaee986a60f379559ba556f256057794211a6c1e812b785aa9fe3179357b24b0da
-DIST xia2-0.3.1.6.tar.bz2 3464982 SHA256 fde814a763e6666a1618d01569c19d574f1bf71d754dc3960beeb13c35dd201f SHA512 d00ba2c42c88d01522859839cbee6a93662ed7f89fb146babffa1dd5d6af12ca72cc146157e0dc88bba1d6543f8509fc9027e1c42ed3ae15dd3e168ca18e1858 WHIRLPOOL ccedcbf910ec5bed637739f7519e14eb249b89ae6ccd83a632ab8571a3af62f1f168f8dfd88287fed9fe927b98230e083a0d2d4525f47bc49c4074375a46a796
-DIST xia2-0.3.1.7.tar.bz2 3650285 SHA256 54beb26396c4b6ecb343544c777c2505238385f2127482d035d2c47b24a7fcf1 SHA512 d25788e6564b0f8f4c8e6723347b7691277b01192ead8f37bc7e6d1cdfbee5b22a1329f4ff82d9287875df2de1358e738de08c6a4d19353ccb40c31343dce7bd WHIRLPOOL 1c7306a54a5262632e0319a289f57610badea3945b61653039c78772399557f895ea57e02bbff6804704df8a08f4aa35fce7746e9e03807143d0e395bcd93c75
-DIST xia2-0.3.3.1.tar.bz2 3074989 SHA256 f1bf94cd9305f768fea1b541ac53d66917126e92620263a96f9c23923ec829c4 SHA512 656abd51dc6764dee16423e2ea75f590e7a04046c5ac60ce013615c91b3fd41c0089351ceb948203643bff442753773aa639b036efc089ce26592b52b187f656 WHIRLPOOL f11a6bba359ce9f3095d2993fb331a8c70a44bc1ef31dc08663ee63372db995047d5e1b4693808a347eedeb487a1b799c4e080c05416786209f62e7b619ddec8
-DIST xia2-0.3.3.3.tar.bz2 2919316 SHA256 3cf09fcf9d2c0ea6d6cb8cf66a3c5af752b4345af6a882e2d398424cf3b4b0d3 SHA512 913b5a6e24c3c070cc36b404b987331d8de99756d0f598ef485ba5fef3b4bc42d17bf4b4e648d5c99f014872d554b94880a7542dfb9ab6969e272ec986127561 WHIRLPOOL 5f19e3b06df7d5a83d75296fe9c9956f5c0b995cd5d10f1adb66e519d9dbcdd73edcbec53acb90aede6f2955bbd88991d6283af9a3578ad26a686e8530bfdffa
-DIST xia2-0.3.4.0.tar.bz2 21404771 SHA256 20afe3d24c35446ef8c8944974d684229f053d3916e96e46766d8eefa4c5fabf SHA512 7d2444cb2acfcd2d7ca4c37d5714e7c249ffc419e9d7e1dbb33ccf18adc07f05a2b043af5aee721c64639b991dbbfd356181630229e91e0f871489870f9a8d51 WHIRLPOOL 14759e436d42e4b5ae558616d297f41eb9a345b19df4a4d02d2cb3c61937320d9161343b126b393049319ab6e37dc3890566b1bd3f2bff1a29cd108931640a90
diff --git a/sci-chemistry/xia2/files/0.3.1.0-fix-syntax.patch b/sci-chemistry/xia2/files/0.3.1.0-fix-syntax.patch
deleted file mode 100644
index 9d92af7e33ce..000000000000
--- a/sci-chemistry/xia2/files/0.3.1.0-fix-syntax.patch
+++ /dev/null
@@ -1,61 +0,0 @@
-diff --git a/xia2-0.3.1.0/Applications/xia2find.py b/xia2-0.3.1.0/Applications/xia2find.py
-index 1a3b0e2..e0b8a1e 100755
---- a/xia2-0.3.1.0/Applications/xia2find.py
-+++ b/xia2-0.3.1.0/Applications/xia2find.py
-@@ -38,7 +38,7 @@ from Schema.Sweep import SweepFactory
- from Experts.FindImages import image2template_directory
-
- known_image_extensions = ['img', 'mccd', 'mar2300', 'mar1200', 'mar3450',
-- 'osc', 'cbf', 'mar2000']]
-+ 'osc', 'cbf', 'mar2000']
- known_sweeps = { }
-
- def is_image_name(file):
-diff --git a/xia2-0.3.1.0/Experts/DRStrategyExpert.py b/xia2-0.3.1.0/Experts/DRStrategyExpert.py
-index 28b1dc3..dba3ef7 100644
---- a/xia2-0.3.1.0/Experts/DRStrategyExpert.py
-+++ b/xia2-0.3.1.0/Experts/DRStrategyExpert.py
-@@ -48,24 +48,24 @@ strategy_dict = {
- 'default':{
- 'score':1,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}
-+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'},
- 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat',
- 'pointless-1.1.0.4']},
- 'default':{
- 'score':2,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'}
-+ 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'},
- 'depends-on':['labelit.screen', 'mosflm', 'scala', 'reindex',
- 'pointless-1.1.0.4']},
- 'mosaic':{
- 'score':1,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}
-+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'},
- 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat',
- 'pointless-1.1.0.4']},
- 'mosaic':{
- 'score':2,
- 'pipeline':{
-- 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'}
-+ 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'},
- 'depends-on':['xds', 'xscale']}
- }
-diff --git a/xia2core-0.3.1.0/Python/Examples/CCP4/Cad.py b/xia2core-0.3.1.0/Python/Examples/CCP4/Cad.py
-index 88f9218..5fb6f2a 100644
---- a/xia2core-0.3.1.0/Python/Examples/CCP4/Cad.py
-+++ b/xia2core-0.3.1.0/Python/Examples/CCP4/Cad.py
-@@ -49,8 +49,8 @@ def Cad(DriverType = None):
- self.add_command_line(hklin)
-
- self.set_task('Rewriting reflections %s => %s' %
-- ` (os.path.split(hklin)[-1],
-- ` os.path.split(self.getHklout())[-1]))
-+ (os.path.split(hklin)[-1],
-+ os.path.split(self.getHklout())[-1]))
-
- self.start()
-
diff --git a/sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch b/sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch
deleted file mode 100644
index 7770a53c4451..000000000000
--- a/sci-chemistry/xia2/files/0.3.1.6-fix-syntax.patch
+++ /dev/null
@@ -1,61 +0,0 @@
-diff --git a/xia2-0.3.1.6/Applications/xia2find.py b/xia2-0.3.1.6/Applications/xia2find.py
-index 1a3b0e2..e0b8a1e 100755
---- a/xia2-0.3.1.6/Applications/xia2find.py
-+++ b/xia2-0.3.1.6/Applications/xia2find.py
-@@ -38,7 +38,7 @@ from Schema.Sweep import SweepFactory
- from Experts.FindImages import image2template_directory
-
- known_image_extensions = ['img', 'mccd', 'mar2300', 'mar1200', 'mar3450',
-- 'osc', 'cbf', 'mar2000']]
-+ 'osc', 'cbf', 'mar2000']
- known_sweeps = { }
-
- def is_image_name(file):
-diff --git a/xia2-0.3.1.6/Experts/DRStrategyExpert.py b/xia2-0.3.1.6/Experts/DRStrategyExpert.py
-index 28b1dc3..dba3ef7 100644
---- a/xia2-0.3.1.6/Experts/DRStrategyExpert.py
-+++ b/xia2-0.3.1.6/Experts/DRStrategyExpert.py
-@@ -48,24 +48,24 @@ strategy_dict = {
- 'default':{
- 'score':1,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}
-+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'},
- 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat',
- 'pointless-1.1.0.4']},
- 'default':{
- 'score':2,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'}
-+ 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'},
- 'depends-on':['labelit.screen', 'mosflm', 'scala', 'reindex',
- 'pointless-1.1.0.4']},
- 'mosaic':{
- 'score':1,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}
-+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'},
- 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat',
- 'pointless-1.1.0.4']},
- 'mosaic':{
- 'score':2,
- 'pipeline':{
-- 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'}
-+ 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'},
- 'depends-on':['xds', 'xscale']}
- }
-diff --git a/xia2core-0.3.1.6/Python/Examples/CCP4/Cad.py b/xia2core-0.3.1.6/Python/Examples/CCP4/Cad.py
-index 88f9218..5fb6f2a 100644
---- a/xia2core-0.3.1.6/Python/Examples/CCP4/Cad.py
-+++ b/xia2core-0.3.1.6/Python/Examples/CCP4/Cad.py
-@@ -49,8 +49,8 @@ def Cad(DriverType = None):
- self.add_command_line(hklin)
-
- self.set_task('Rewriting reflections %s => %s' %
-- ` (os.path.split(hklin)[-1],
-- ` os.path.split(self.getHklout())[-1]))
-+ (os.path.split(hklin)[-1],
-+ os.path.split(self.getHklout())[-1]))
-
- self.start()
-
diff --git a/sci-chemistry/xia2/files/0.3.1.7-fix-syntax.patch b/sci-chemistry/xia2/files/0.3.1.7-fix-syntax.patch
deleted file mode 100644
index ec8ada48aad1..000000000000
--- a/sci-chemistry/xia2/files/0.3.1.7-fix-syntax.patch
+++ /dev/null
@@ -1,61 +0,0 @@
-diff --git a/xia2-0.3.1.7/Applications/xia2find.py b/xia2-0.3.1.7/Applications/xia2find.py
-index 1a3b0e2..e0b8a1e 100755
---- a/xia2-0.3.1.7/Applications/xia2find.py
-+++ b/xia2-0.3.1.7/Applications/xia2find.py
-@@ -38,7 +38,7 @@ from Schema.Sweep import SweepFactory
- from Experts.FindImages import image2template_directory
-
- known_image_extensions = ['img', 'mccd', 'mar2300', 'mar1200', 'mar3450',
-- 'osc', 'cbf', 'mar2000']]
-+ 'osc', 'cbf', 'mar2000']
- known_sweeps = { }
-
- def is_image_name(file):
-diff --git a/xia2-0.3.1.7/Experts/DRStrategyExpert.py b/xia2-0.3.1.7/Experts/DRStrategyExpert.py
-index 28b1dc3..dba3ef7 100644
---- a/xia2-0.3.1.7/Experts/DRStrategyExpert.py
-+++ b/xia2-0.3.1.7/Experts/DRStrategyExpert.py
-@@ -48,24 +48,24 @@ strategy_dict = {
- 'default':{
- 'score':1,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}
-+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'},
- 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat',
- 'pointless-1.1.0.4']},
- 'default':{
- 'score':2,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'}
-+ 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'},
- 'depends-on':['labelit.screen', 'mosflm', 'scala', 'reindex',
- 'pointless-1.1.0.4']},
- 'mosaic':{
- 'score':1,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}
-+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'},
- 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat',
- 'pointless-1.1.0.4']},
- 'mosaic':{
- 'score':2,
- 'pipeline':{
-- 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'}
-+ 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'},
- 'depends-on':['xds', 'xscale']}
- }
-diff --git a/xia2core-0.3.1.7/Python/Examples/CCP4/Cad.py b/xia2core-0.3.1.7/Python/Examples/CCP4/Cad.py
-index 88f9218..5fb6f2a 100644
---- a/xia2core-0.3.1.7/Python/Examples/CCP4/Cad.py
-+++ b/xia2core-0.3.1.7/Python/Examples/CCP4/Cad.py
-@@ -49,8 +49,8 @@ def Cad(DriverType = None):
- self.add_command_line(hklin)
-
- self.set_task('Rewriting reflections %s => %s' %
-- ` (os.path.split(hklin)[-1],
-- ` os.path.split(self.getHklout())[-1]))
-+ (os.path.split(hklin)[-1],
-+ os.path.split(self.getHklout())[-1]))
-
- self.start()
-
diff --git a/sci-chemistry/xia2/files/0.3.3.1-fix-syntax.patch b/sci-chemistry/xia2/files/0.3.3.1-fix-syntax.patch
deleted file mode 100644
index 36cf6bb60d1d..000000000000
--- a/sci-chemistry/xia2/files/0.3.3.1-fix-syntax.patch
+++ /dev/null
@@ -1,61 +0,0 @@
-diff --git a/xia2-0.3.3.0/Applications/xia2find.py b/xia2-0.3.3.0/Applications/xia2find.py
-index 1a3b0e2..e0b8a1e 100755
---- a/xia2-0.3.3.1/Applications/xia2find.py
-+++ b/xia2-0.3.3.1/Applications/xia2find.py
-@@ -38,7 +38,7 @@ from Schema.Sweep import SweepFactory
- from Experts.FindImages import image2template_directory
-
- known_image_extensions = ['img', 'mccd', 'mar2300', 'mar1200', 'mar3450',
-- 'osc', 'cbf', 'mar2000']]
-+ 'osc', 'cbf', 'mar2000']
- known_sweeps = { }
-
- def is_image_name(file):
-diff --git a/xia2-0.3.3.0/Experts/DRStrategyExpert.py b/xia2-0.3.3.0/Experts/DRStrategyExpert.py
-index 28b1dc3..dba3ef7 100644
---- a/xia2-0.3.3.1/Experts/DRStrategyExpert.py
-+++ b/xia2-0.3.3.1/Experts/DRStrategyExpert.py
-@@ -48,24 +48,24 @@ strategy_dict = {
- 'default':{
- 'score':1,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}
-+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'},
- 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat',
- 'pointless-1.1.0.4']},
- 'default':{
- 'score':2,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'}
-+ 'indexer':'labelit', 'integrater':'mosflm', 'scaler':'mosflm'},
- 'depends-on':['labelit.screen', 'mosflm', 'scala', 'reindex',
- 'pointless-1.1.0.4']},
- 'mosaic':{
- 'score':1,
- 'pipeline':{
-- 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'}
-+ 'indexer':'labelit', 'integrater':'xds', 'scaler':'xds-hybrid'},
- 'depends-on':['labelit.screen', 'xds', 'xscale', 'scala', 'combat',
- 'pointless-1.1.0.4']},
- 'mosaic':{
- 'score':2,
- 'pipeline':{
-- 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'}
-+ 'indexer':'xds', 'integrater':'xds', 'scaler':'xds'},
- 'depends-on':['xds', 'xscale']}
- }
-diff --git a/xia2core-0.3.3.0/Python/Examples/CCP4/Cad.py b/xia2core-0.3.3.0/Python/Examples/CCP4/Cad.py
-index 88f9218..5fb6f2a 100644
---- a/xia2core-0.3.3.1/Python/Examples/CCP4/Cad.py
-+++ b/xia2core-0.3.3.1/Python/Examples/CCP4/Cad.py
-@@ -49,8 +49,8 @@ def Cad(DriverType = None):
- self.add_command_line(hklin)
-
- self.set_task('Rewriting reflections %s => %s' %
-- ` (os.path.split(hklin)[-1],
-- ` os.path.split(self.getHklout())[-1]))
-+ (os.path.split(hklin)[-1],
-+ os.path.split(self.getHklout())[-1]))
-
- self.start()
-
diff --git a/sci-chemistry/xia2/files/0.3.3.3-fix-syntax.patch b/sci-chemistry/xia2/files/0.3.3.3-fix-syntax.patch
deleted file mode 100644
index 53cacbb5c681..000000000000
--- a/sci-chemistry/xia2/files/0.3.3.3-fix-syntax.patch
+++ /dev/null
@@ -1,28 +0,0 @@
-diff --git a/xia2-0.3.3.0/Applications/xia2find.py b/xia2-0.3.3.0/Applications/xia2find.py
-index 1a3b0e2..e0b8a1e 100755
---- a/xia2-0.3.3.3/Applications/xia2find.py
-+++ b/xia2-0.3.3.3/Applications/xia2find.py
-@@ -38,7 +38,7 @@ from Schema.Sweep import SweepFactory
- from Experts.FindImages import image2template_directory
-
- known_image_extensions = ['img', 'mccd', 'mar2300', 'mar1200', 'mar3450',
-- 'osc', 'cbf', 'mar2000']]
-+ 'osc', 'cbf', 'mar2000']
- known_sweeps = { }
-
- def is_image_name(file):
-diff --git a/xia2core-0.3.3.0/Python/Examples/CCP4/Cad.py b/xia2core-0.3.3.0/Python/Examples/CCP4/Cad.py
-index 88f9218..5fb6f2a 100644
---- a/xia2core-0.3.3.3/Python/Examples/CCP4/Cad.py
-+++ b/xia2core-0.3.3.3/Python/Examples/CCP4/Cad.py
-@@ -49,8 +49,8 @@ def Cad(DriverType = None):
- self.add_command_line(hklin)
-
- self.set_task('Rewriting reflections %s => %s' %
-- ` (os.path.split(hklin)[-1],
-- ` os.path.split(self.getHklout())[-1]))
-+ (os.path.split(hklin)[-1],
-+ os.path.split(self.getHklout())[-1]))
-
- self.start()
-
diff --git a/sci-chemistry/xia2/files/0.3.4.0-fix-syntax.patch b/sci-chemistry/xia2/files/0.3.4.0-fix-syntax.patch
deleted file mode 100644
index 9ba4c94495ea..000000000000
--- a/sci-chemistry/xia2/files/0.3.4.0-fix-syntax.patch
+++ /dev/null
@@ -1,28 +0,0 @@
-diff --git a/xia2-0.3.3.0/Applications/xia2find.py b/xia2-0.3.3.0/Applications/xia2find.py
-index 1a3b0e2..e0b8a1e 100755
---- a/xia2-0.3.4.0/Applications/xia2find.py
-+++ b/xia2-0.3.4.0/Applications/xia2find.py
-@@ -38,7 +38,7 @@ from Schema.Sweep import SweepFactory
- from Experts.FindImages import image2template_directory
-
- known_image_extensions = ['img', 'mccd', 'mar2300', 'mar1200', 'mar3450',
-- 'osc', 'cbf', 'mar2000']]
-+ 'osc', 'cbf', 'mar2000']
- known_sweeps = { }
-
- def is_image_name(file):
-diff --git a/xia2core-0.3.3.0/Python/Examples/CCP4/Cad.py b/xia2core-0.3.3.0/Python/Examples/CCP4/Cad.py
-index 88f9218..5fb6f2a 100644
---- a/xia2core-0.3.4.0/Python/Examples/CCP4/Cad.py
-+++ b/xia2core-0.3.4.0/Python/Examples/CCP4/Cad.py
-@@ -49,8 +49,8 @@ def Cad(DriverType = None):
- self.add_command_line(hklin)
-
- self.set_task('Rewriting reflections %s => %s' %
-- ` (os.path.split(hklin)[-1],
-- ` os.path.split(self.getHklout())[-1]))
-+ (os.path.split(hklin)[-1],
-+ os.path.split(self.getHklout())[-1]))
-
- self.start()
-
diff --git a/sci-chemistry/xia2/metadata.xml b/sci-chemistry/xia2/metadata.xml
deleted file mode 100644
index 9ac9ffdb3a41..000000000000
--- a/sci-chemistry/xia2/metadata.xml
+++ /dev/null
@@ -1,5 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<herd>sci-chemistry</herd>
-</pkgmetadata>
diff --git a/sci-chemistry/xia2/xia2-0.3.1.0.ebuild b/sci-chemistry/xia2/xia2-0.3.1.0.ebuild
deleted file mode 100644
index 33b3d841acfa..000000000000
--- a/sci-chemistry/xia2/xia2-0.3.1.0.ebuild
+++ /dev/null
@@ -1,59 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="3"
-
-inherit eutils python
-
-DESCRIPTION="An automated data reduction system for crystallography"
-HOMEPAGE="http://www.ccp4.ac.uk/xia/"
-SRC_URI="http://www.ccp4.ac.uk/${PN}/${P}.tar.bz2"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
- >=sci-chemistry/ccp4-apps-6.1.2
- sci-chemistry/mosflm
- sci-chemistry/pointless
- >=sci-libs/ccp4-libs-6.1.2
- sci-libs/cctbx"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
- find . -name '*.bat' | xargs rm || die
-
- epatch "${FILESDIR}"/${PV}-fix-syntax.patch
-}
-
-src_install() {
- rm -rf ${P}/binaries ${PN}core-${PV}/Test || die
-
- insinto /usr/share/ccp4/XIAROOT/
- doins -r * || die
-
- # Set programs executable
-# fperms cannot handle wildcards
- chmod 755 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/* || die
- chmod 644 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/*.py || die
-
- cat >> "${T}"/23XIA <<- EOF
- XIA2_HOME="${EPREFIX}"/usr/share/ccp4/XIAROOT
- XIA2CORE_ROOT="${EPREFIX}"/usr/share/ccp4/XIAROOT/xia2core-${PV}
- XIA2_ROOT="${EPREFIX}"/usr/share/ccp4/XIAROOT/xia2-${PV}
- PATH="${EPREFIX}"/usr/share/ccp4/XIAROOT/xia2-${PV}/Applications
- EOF
-
- doenvd "${T}"/23XIA
-}
-
-pkg_postinst() {
- python_mod_optimize /usr/share/ccp4/XIAROOT
-}
-
-pkg_postrm() {
- python_mod_cleanup /usr/share/ccp4/XIAROOT
-}
diff --git a/sci-chemistry/xia2/xia2-0.3.1.6.ebuild b/sci-chemistry/xia2/xia2-0.3.1.6.ebuild
deleted file mode 100644
index 537735e1351f..000000000000
--- a/sci-chemistry/xia2/xia2-0.3.1.6.ebuild
+++ /dev/null
@@ -1,66 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-
-inherit eutils python
-
-DESCRIPTION="An automated data reduction system for crystallography"
-HOMEPAGE="http://www.ccp4.ac.uk/xia/"
-SRC_URI="http://www.ccp4.ac.uk/${PN}/${P}.tar.bz2"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- >=sci-chemistry/ccp4-apps-6.1.2
- sci-chemistry/mosflm
- sci-chemistry/pointless
- >=sci-libs/ccp4-libs-6.1.2
- sci-libs/cctbx"
-DEPEND="${RDEPEND}"
-
-pkg_setup() {
- python_set_active_version 2
-}
-
-src_prepare() {
- find . -name '*.bat' -delete || die
-
- epatch "${FILESDIR}"/${PV}-fix-syntax.patch
- python_convert_shebangs -r $(python_get_version) .
-}
-
-src_install() {
- rm -rf ${P}/binaries ${PN}core-${PV}/Test || die
-
- insinto /usr/share/ccp4/XIAROOT/
- doins -r * || die
-
- # Set programs executable
-# fperms cannot handle wildcards
- chmod 755 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/* || die
- chmod 644 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/*.py || die
-
- cat >> "${T}"/23XIA <<- EOF
- XIA2_HOME="${EPREFIX}"/usr/share/ccp4/XIAROOT
- XIA2CORE_ROOT="${EPREFIX}"/usr/share/ccp4/XIAROOT/xia2core-${PV}
- XIA2_ROOT="${EPREFIX}"/usr/share/ccp4/XIAROOT/xia2-${PV}
- PATH="${EPREFIX}"/usr/share/ccp4/XIAROOT/xia2-${PV}/Applications
- EOF
-
- doenvd "${T}"/23XIA
-}
-
-pkg_postinst() {
- python_mod_optimize /usr/share/ccp4/XIAROOT
-}
-
-pkg_postrm() {
- python_mod_cleanup /usr/share/ccp4/XIAROOT
-}
diff --git a/sci-chemistry/xia2/xia2-0.3.1.7.ebuild b/sci-chemistry/xia2/xia2-0.3.1.7.ebuild
deleted file mode 100644
index 16fbf797d1b4..000000000000
--- a/sci-chemistry/xia2/xia2-0.3.1.7.ebuild
+++ /dev/null
@@ -1,66 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI="3"
-
-PYTHON_DEPEND="2"
-
-inherit eutils python
-
-DESCRIPTION="An automated data reduction system for crystallography"
-HOMEPAGE="http://www.ccp4.ac.uk/xia/"
-SRC_URI="http://www.ccp4.ac.uk/${PN}/${P}.tar.bz2"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- >=sci-chemistry/ccp4-apps-6.1.2
- sci-chemistry/mosflm
- sci-chemistry/pointless
- >=sci-libs/ccp4-libs-6.1.2
- sci-libs/cctbx"
-DEPEND="${RDEPEND}"
-
-pkg_setup() {
- python_set_active_version 2
-}
-
-src_prepare() {
- find . -name '*.bat' -delete || die
-
- epatch "${FILESDIR}"/${PV}-fix-syntax.patch
- python_convert_shebangs -r $(python_get_version) .
-}
-
-src_install() {
- rm -rf ${P}/binaries ${PN}core-${PV}/Test || die
-
- insinto /usr/share/ccp4/XIAROOT/
- doins -r * || die
-
- # Set programs executable
-# fperms cannot handle wildcards
- chmod 755 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/* || die
- chmod 644 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/*.py || die
-
- cat >> "${T}"/23XIA <<- EOF
- XIA2_HOME="${EPREFIX}"/usr/share/ccp4/XIAROOT
- XIA2CORE_ROOT="${EPREFIX}"/usr/share/ccp4/XIAROOT/xia2core-${PV}
- XIA2_ROOT="${EPREFIX}"/usr/share/ccp4/XIAROOT/xia2-${PV}
- PATH="${EPREFIX}"/usr/share/ccp4/XIAROOT/xia2-${PV}/Applications
- EOF
-
- doenvd "${T}"/23XIA
-}
-
-pkg_postinst() {
- python_mod_optimize /usr/share/ccp4/XIAROOT
-}
-
-pkg_postrm() {
- python_mod_cleanup /usr/share/ccp4/XIAROOT
-}
diff --git a/sci-chemistry/xia2/xia2-0.3.3.1.ebuild b/sci-chemistry/xia2/xia2-0.3.3.1.ebuild
deleted file mode 100644
index 26fb7d0d4c83..000000000000
--- a/sci-chemistry/xia2/xia2-0.3.3.1.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-
-inherit eutils python
-
-DESCRIPTION="An automated data reduction system for crystallography"
-HOMEPAGE="http://www.ccp4.ac.uk/xia/"
-SRC_URI="http://www.ccp4.ac.uk/${PN}/${P}.tar.bz2"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- >=sci-chemistry/ccp4-apps-6.1.2
- sci-chemistry/mosflm
- sci-chemistry/pointless
- >=sci-libs/ccp4-libs-6.1.2
- sci-libs/cctbx"
-DEPEND="${RDEPEND}"
-
-pkg_setup() {
- python_set_active_version 2
-}
-
-src_prepare() {
- find . -name '*.bat' -delete || die
-
- epatch "${FILESDIR}"/${PV}-fix-syntax.patch
- python_convert_shebangs -r $(python_get_version) .
-}
-
-src_install() {
- rm -rf ${P}/binaries ${PN}core-${PV}/Test || die
-
- insinto /usr/share/ccp4/XIAROOT/
- doins -r * || die
-
- # Set programs executable
-# fperms cannot handle wildcards
- chmod 755 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/* || die
- chmod 644 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/*.py || die
-
- cat >> "${T}"/23XIA <<- EOF
- XIA2_HOME="${EPREFIX}/usr/share/ccp4/XIAROOT"
- XIA2CORE_ROOT="${EPREFIX}/usr/share/ccp4/XIAROOT/xia2core-${PV}"
- XIA2_ROOT="${EPREFIX}/usr/share/ccp4/XIAROOT/xia2-${PV}"
- PATH="${EPREFIX}/usr/share/ccp4/XIAROOT/xia2-${PV}/Applications"
- EOF
-
- doenvd "${T}"/23XIA
-}
-
-pkg_postinst() {
- python_mod_optimize /usr/share/ccp4/XIAROOT
- echo ""
- elog "In order to use the package, you need to"
- elog "\t source ${EPREFIX}/etc/profile"
- echo ""
-}
-
-pkg_postrm() {
- python_mod_cleanup /usr/share/ccp4/XIAROOT
-}
diff --git a/sci-chemistry/xia2/xia2-0.3.3.3.ebuild b/sci-chemistry/xia2/xia2-0.3.3.3.ebuild
deleted file mode 100644
index 60778aa75fb9..000000000000
--- a/sci-chemistry/xia2/xia2-0.3.3.3.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-
-inherit eutils python
-
-DESCRIPTION="An automated data reduction system for crystallography"
-HOMEPAGE="http://www.ccp4.ac.uk/xia/"
-SRC_URI="http://www.ccp4.ac.uk/${PN}/${P}.tar.bz2"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- >=sci-chemistry/ccp4-apps-6.1.2
- sci-chemistry/mosflm
- sci-chemistry/pointless
- >=sci-libs/ccp4-libs-6.1.2
- sci-libs/cctbx"
-DEPEND="${RDEPEND}"
-
-pkg_setup() {
- python_set_active_version 2
-}
-
-src_prepare() {
- find . -name '*.bat' -delete || die
-
- epatch "${FILESDIR}"/${PV}-fix-syntax.patch
- python_convert_shebangs -r $(python_get_version) .
-}
-
-src_install() {
- rm -rf ${P}/binaries ${PN}core-${PV}/Test || die
-
- insinto /usr/share/ccp4/XIAROOT/
- doins -r * || die
-
- # Set programs executable
-# fperms cannot handle wildcards
- chmod 755 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/* || die
- chmod 644 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/*.py || die
-
- cat >> "${T}"/23XIA <<- EOF
- XIA2_HOME="${EPREFIX}/usr/share/ccp4/XIAROOT"
- XIA2CORE_ROOT="${EPREFIX}/usr/share/ccp4/XIAROOT/xia2core-${PV}"
- XIA2_ROOT="${EPREFIX}/usr/share/ccp4/XIAROOT/xia2-${PV}"
- PATH="${EPREFIX}/usr/share/ccp4/XIAROOT/xia2-${PV}/Applications"
- EOF
-
- doenvd "${T}"/23XIA
-}
-
-pkg_postinst() {
- python_mod_optimize /usr/share/ccp4/XIAROOT
- echo ""
- elog "In order to use the package, you need to"
- elog "\t source ${EPREFIX}/etc/profile"
- echo ""
-}
-
-pkg_postrm() {
- python_mod_cleanup /usr/share/ccp4/XIAROOT
-}
diff --git a/sci-chemistry/xia2/xia2-0.3.4.0.ebuild b/sci-chemistry/xia2/xia2-0.3.4.0.ebuild
deleted file mode 100644
index 1d27abd355dc..000000000000
--- a/sci-chemistry/xia2/xia2-0.3.4.0.ebuild
+++ /dev/null
@@ -1,70 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=3
-
-PYTHON_DEPEND="2"
-
-inherit eutils python
-
-DESCRIPTION="An automated data reduction system for crystallography"
-HOMEPAGE="http://www.ccp4.ac.uk/xia/"
-SRC_URI="http://www.ccp4.ac.uk/${PN}/${P}.tar.bz2"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="
- >=sci-chemistry/ccp4-apps-6.1.2
- sci-chemistry/mosflm
- sci-chemistry/pointless
- >=sci-libs/ccp4-libs-6.1.2
- sci-libs/cctbx"
-DEPEND="${RDEPEND}"
-
-pkg_setup() {
- python_set_active_version 2
-}
-
-src_prepare() {
- find . -name '*.bat' -delete || die
-
- epatch "${FILESDIR}"/${PV}-fix-syntax.patch
- python_convert_shebangs -r $(python_get_version) .
-}
-
-src_install() {
- rm -rf ${P}/binaries ${PN}core-${PV}/Test || die
-
- insinto /usr/share/ccp4/XIAROOT/
- doins -r * || die
-
- # Set programs executable
-# fperms cannot handle wildcards
- chmod 755 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/* || die
- chmod 644 "${ED}"/usr/share/ccp4/XIAROOT/${P}/Applications/*.py || die
-
- cat >> "${T}"/23XIA <<- EOF
- XIA2_HOME="${EPREFIX}/usr/share/ccp4/XIAROOT"
- XIA2CORE_ROOT="${EPREFIX}/usr/share/ccp4/XIAROOT/xia2core-${PV}"
- XIA2_ROOT="${EPREFIX}/usr/share/ccp4/XIAROOT/xia2-${PV}"
- PATH="${EPREFIX}/usr/share/ccp4/XIAROOT/xia2-${PV}/Applications"
- EOF
-
- doenvd "${T}"/23XIA
-}
-
-pkg_postinst() {
- python_mod_optimize /usr/share/ccp4/XIAROOT
- echo ""
- elog "In order to use the package, you need to"
- elog "\t source ${EPREFIX}/etc/profile"
- echo ""
-}
-
-pkg_postrm() {
- python_mod_cleanup /usr/share/ccp4/XIAROOT
-}