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path: root/sci-biology/bowtie
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* sci-biology/bowtie: Remove oldDavid Seifert2017-12-253-115/+0
| | | | | | Closes: https://bugs.gentoo.org/630140 Package-Manager: Portage-2.3.19, Repoman-2.3.6 Closes: https://github.com/gentoo/gentoo/pull/6626
* sci-biology/*: Update Manifest hashesMichał Górny2017-12-101-3/+3
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* Drop $Id$ per council decision in bug #611234.Robin H. Johnson2017-02-284-4/+0
| | | | Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
* sci-biology/bowtie: Allow for compiling with GCC 6David Seifert2016-09-192-1/+31
| | | | | | Gentoo-bug: 593966 Package-Manager: portage-2.3.0
* sci-biology/bowtie: version bumpDavid Seifert2016-06-042-1/+1
| | | | Package-Manager: portage-2.3.0_rc1
* sci-biology/bowtie: Version bump to 2.2.8David Seifert2016-04-102-0/+62
| | | | | | * EAPI=6 Package-Manager: portage-2.2.28
* sci-biology/bowtie: unbundle SeqAn, import Debian patchesDavid Seifert2016-04-098-0/+700
| | | | | | * EAPI=6 Package-Manager: portage-2.2.28
* Set appropriate maintainer types in metadata.xml (GLEP 67)Michał Górny2016-01-241-1/+1
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* Replace all herds with appropriate projects (GLEP 67)Michał Górny2016-01-241-1/+4
| | | | | Replace all uses of herd with appropriate project maintainers, or no maintainers in case of herds requested to be disbanded.
* sci-biology/bowtie: Chop DESCRIPTION to 80 charsJustin Lecher2015-12-261-1/+1
| | | | | Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/bowtie: Drop oldJustin Lecher2015-12-263-90/+0
| | | | | | | | obsoletes: Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=564320 Package-Manager: portage-2.2.26 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/bowtie: x86 stable wrt bug #569706Agostino Sarubbo2015-12-251-1/+1
| | | | | | Package-Manager: portage-2.2.24 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/bowtie: x86 stable wrt bug #569708Agostino Sarubbo2015-12-251-1/+1
| | | | | | Package-Manager: portage-2.2.24 RepoMan-Options: --include-arches="x86" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/bowtie: amd64 stable wrt bug #569706Agostino Sarubbo2015-12-251-1/+1
| | | | | | Package-Manager: portage-2.2.24 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/bowtie: amd64 stable wrt bug #569708Agostino Sarubbo2015-12-251-1/+1
| | | | | | Package-Manager: portage-2.2.24 RepoMan-Options: --include-arches="amd64" Signed-off-by: Agostino Sarubbo <ago@gentoo.org>
* sci-biology/bowtie: Respect CXXJustin Lecher2015-10-142-1/+2
| | | | | Package-Manager: portage-2.2.23 Signed-off-by: Justin Lecher <jlec@gentoo.org>
* sci-biology/bowtie: bring back stable bowtie-0.12.8Ted Tanberry2015-10-143-0/+90
| | | | | bowtie-0.12.8 is the only stable variant and removing it breaks the stable depgraph.
* sci-biology/bowtie-2.2.6: Enable 'tbb' USE flag by defaultTed Tanberry2015-10-141-1/+1
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* sci-biology/bowtie-1.1.2: Enable 'tbb' USE flag by defaultTed Tanberry2015-10-141-1/+1
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* sci-biology/bowtie: remove REQUIRED_USETed Tanberry2015-10-141-1/+7
| | | | | | When SSE2 support is not explicitly enabled, the user is informed by erroring out instead of portage recommending enabling cpu flags.
* sci-biology/bowtie: include descriptive header in patchTed Tanberry2015-10-141-0/+4
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* sci-biology/bowtie: do not remove -Wall from CXXFLAGSTed Tanberry2015-10-141-3/+0
| | | | Retain -Wall in CXXFLAGS in bowtie-1.1.2
* sci-biology/bowtie: Add bowtie2 in SLOT=2Ted Tanberry2015-10-141-0/+54
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* sci-biology/bowtie: version bump, SLOT major versionTed Tanberry2015-10-147-133/+79
| | | | | | sci-biology/bowtie is now SLOTed, in order to allow for a parallel installation with bowtie2. In addition, the latest bowtie now supports dev-cpp/tbb with 'tbb' USE flag.
* Revert DOCTYPE SYSTEM https changes in metadata.xmlMike Gilbert2015-08-241-1/+1
| | | | | | | repoman does not yet accept the https version. This partially reverts eaaface92ee81f30a6ac66fe7acbcc42c00dc450. Bug: https://bugs.gentoo.org/552720
* Use https by defaultJustin Lecher2015-08-241-1/+1
| | | | | | Convert all URLs for sites supporting encrypted connections from http to https Signed-off-by: Justin Lecher <jlec@gentoo.org>
* proj/gentoo: Initial commitRobin H. Johnson2015-08-085-0/+141
This commit represents a new era for Gentoo: Storing the gentoo-x86 tree in Git, as converted from CVS. This commit is the start of the NEW history. Any historical data is intended to be grafted onto this point. Creation process: 1. Take final CVS checkout snapshot 2. Remove ALL ChangeLog* files 3. Transform all Manifests to thin 4. Remove empty Manifests 5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$ 5.1. Do not touch files with -kb/-ko keyword flags. Signed-off-by: Robin H. Johnson <robbat2@gentoo.org> X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed