From 90152a8f4a9c81520a37f329793c6ed8d1dc963e Mon Sep 17 00:00:00 2001
From: David Seifert <soap@gentoo.org>
Date: Mon, 3 Aug 2020 18:54:32 +0200
Subject: sci-biology/HTSeq: Bump to 0.12.4

Bug: https://bugs.gentoo.org/696484
Bug: https://bugs.gentoo.org/718466
Package-Manager: Portage-3.0.1, Repoman-2.3.23
Signed-off-by: David Seifert <soap@gentoo.org>
---
 sci-biology/HTSeq/HTSeq-0.12.4.ebuild | 33 +++++++++++++++++++++++++++++++++
 sci-biology/HTSeq/Manifest            |  1 +
 2 files changed, 34 insertions(+)
 create mode 100644 sci-biology/HTSeq/HTSeq-0.12.4.ebuild

(limited to 'sci-biology')

diff --git a/sci-biology/HTSeq/HTSeq-0.12.4.ebuild b/sci-biology/HTSeq/HTSeq-0.12.4.ebuild
new file mode 100644
index 000000000000..1f5693d9a139
--- /dev/null
+++ b/sci-biology/HTSeq/HTSeq-0.12.4.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{6..9} )
+
+inherit distutils-r1
+
+DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
+HOMEPAGE="https://htseq.readthedocs.io/"
+
+if [[ ${PV} == *9999 ]]; then
+	inherit git-r3
+	EGIT_REPO_URI="https://github.com/htseq/htseq.git"
+else
+	SRC_URI="https://github.com/htseq/htseq/archive/release_${PV}.tar.gz -> ${P}.tar.gz"
+
+	S="${WORKDIR}"/htseq-release_${PV}
+	KEYWORDS="~amd64"
+fi
+
+LICENSE="GPL-3+"
+SLOT="0"
+
+RDEPEND="
+	dev-python/numpy[${PYTHON_USEDEP}]
+	dev-python/matplotlib[${PYTHON_USEDEP}]
+	sci-biology/pysam[${PYTHON_USEDEP}]"
+DEPEND="${RDEPEND}"
+BDEPEND="
+	>=dev-lang/swig-3.0.8
+	dev-python/cython[${PYTHON_USEDEP}]"
diff --git a/sci-biology/HTSeq/Manifest b/sci-biology/HTSeq/Manifest
index d521aef0c0b0..bc4ffd5f3603 100644
--- a/sci-biology/HTSeq/Manifest
+++ b/sci-biology/HTSeq/Manifest
@@ -1 +1,2 @@
+DIST HTSeq-0.12.4.tar.gz 36187218 BLAKE2B 27be4e8783f9e32c10e23ae812069b489eb11dfa4058db43b5db4b8089792351901255103e4d4de1bcf866da3acd13e742adf8d35a9b70305aa156c70dde0837 SHA512 ec4a1a7e9177f103465840ffa9f936a5e887ffd17760b99d4cbdfd5a88e2ab44275fadfcbee153aadc6e828de7be205ed7a07f3a0548457b7c66826341c3ca64
 DIST HTSeq-0.9.1.tar.gz 596941 BLAKE2B 6865c36056bff2008ae8bf18d0ac81dbf721fb97cdcc8bbd9150356fc80ae99e0cb872033fac274b40df3d1c95e9bcfd83c4f7d033184725596ffc96081e26d1 SHA512 ec3e1ec9cf66918f2afacf7997ab5da02015896ddd97260f5abec8343a9013cf6e857872be38b2cd3bb5bde655abe602a3c22c32448190f32e1a8f1153a19344
-- 
cgit v1.2.3-65-gdbad