From d7a2a3ae8f4c468241ac6597f1bea2273b154a53 Mon Sep 17 00:00:00 2001
From: David Seifert <soap@gentoo.org>
Date: Wed, 14 Dec 2016 23:50:25 +0100
Subject: sci-biology/bamtools: Remove old

Package-Manager: portage-2.3.3
Closes: https://github.com/gentoo/gentoo/pull/3120
---
 sci-biology/bamtools/Manifest                      |  2 -
 sci-biology/bamtools/bamtools-1.0.2-r1.ebuild      | 48 ----------------------
 sci-biology/bamtools/bamtools-2.3.0.ebuild         | 31 --------------
 .../bamtools/files/bamtools-2.3.0-unbundle.patch   | 23 -----------
 4 files changed, 104 deletions(-)
 delete mode 100644 sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
 delete mode 100644 sci-biology/bamtools/bamtools-2.3.0.ebuild
 delete mode 100644 sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch

(limited to 'sci-biology')

diff --git a/sci-biology/bamtools/Manifest b/sci-biology/bamtools/Manifest
index fa04b1b15f81..f276fed11520 100644
--- a/sci-biology/bamtools/Manifest
+++ b/sci-biology/bamtools/Manifest
@@ -1,3 +1 @@
-DIST bamtools-1.0.2.tar.gz 207523 SHA256 d3ca75d2bec531f15dbc400a76afbe48d47452ce05552c88943bbce81a0862d8 SHA512 1934d40d50f3fdf2b1fcacb8b59cf954a3c791d3095649ac4f1246563e9d8d4afe385e42a2c6c383f0bb519eede401d12c71203d279b33e01575222f9f84c244 WHIRLPOOL 9fb4d4feb3ff867866a96533231a1b8284fd5156ab142cad727d32f8f3c157e246cca59185c3bdc253b19bde2514404a7107a62443780b060f6e8f270622c990
-DIST bamtools-2.3.0.tar.gz 539446 SHA256 288046e6d5d41afdc5fce8608c5641cf2b8e670644587c1315b90bbe92f039af SHA512 432f66384cffc04ab6bc7dc66d8f7b79c1e468d0068db4cabb5cac05f9b6bef7968eff71ffb3ee51b84e23d9bb66a11ef267024138f40116c25e7f18e7210a5c WHIRLPOOL dd888f67c3d0b0ce2f5f2875e242e5df0d54cefd13693230b5f10eb57dd780304b601027cf65f6598a54061a7166903bf06c6c9a46939f6ce6bbb246cab89993
 DIST bamtools-2.4.1.tar.gz 540482 SHA256 933a0c1a83c88c1dac8078c0c0e82f6794c75cb927265399404bc2cc2611204b SHA512 ee674014f27b2dc0aa7c0415e8654ee7c39cfdecafbd9983d970fad6ad29f070a7ff372ee05765956cf7c8f8bb3b9763b6e537e693a0d2d64680148b1a23cfee WHIRLPOOL 6ef73f0713ebf993123eac7095061e32fe6a53db383e28a5dd8967afee92fb211ce56611de9718ce4cce84bdee14157ff968e0a6edcaead4e06b44008b78b84c
diff --git a/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild b/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
deleted file mode 100644
index dc1b60ba432e..000000000000
--- a/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit cmake-utils
-
-DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
-HOMEPAGE="https://github.com/pezmaster31/bamtools"
-SRC_URI="mirror://github/pezmaster31/bamtools/"${P}".tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
-	dev-libs/jsoncpp
-	sys-libs/zlib"
-DEPEND="${RDEPEND}"
-
-src_prepare() {
-	sed \
-		-e '/third_party/d' \
-		-i src/CMakeLists.txt || die
-	rm -r src/third_party || die
-
-	sed \
-		-e 's:json.h:json/json.h:g' \
-		-i src/toolkit/bamtools_filter.cpp || die
-
-	cmake-utils_src_prepare
-}
-
-src_install() {
-	local i
-	for i in bin/bamtools-${PV} lib/libbamtools.so.${PV} lib/libbamtools-utils.so.${PV}; do
-		TMPDIR="$(pwd)" scanelf -Xr $i || die
-	done
-
-	dobin bin/bamtools
-	dolib.so lib/*so*
-	use static-libs && dolib.a lib/*a
-	insinto /usr/include/bamtools
-	doins include/api include/shared
-	dodoc README
-}
diff --git a/sci-biology/bamtools/bamtools-2.3.0.ebuild b/sci-biology/bamtools/bamtools-2.3.0.ebuild
deleted file mode 100644
index b2d7d623f900..000000000000
--- a/sci-biology/bamtools/bamtools-2.3.0.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit cmake-utils
-
-DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
-HOMEPAGE="https://github.com/pezmaster31/bamtools"
-SRC_URI="https://github.com/pezmaster31/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="static-libs"
-
-DEPEND="
-	>=dev-libs/jsoncpp-0.5.0-r1
-	<dev-libs/jsoncpp-1
-	sys-libs/zlib"
-RDEPEND="${DEPEND}"
-
-PATCHES=( "${FILESDIR}"/${P}-unbundle.patch )
-
-src_install() {
-	cmake-utils_src_install
-	if ! use static-libs; then
-		rm "${ED}"/usr/$(get_libdir)/*.a || die
-	fi
-}
diff --git a/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch b/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch
deleted file mode 100644
index c07c59d2cddd..000000000000
--- a/sci-biology/bamtools/files/bamtools-2.3.0-unbundle.patch
+++ /dev/null
@@ -1,23 +0,0 @@
---- bamtools-2.3.0/src/api/CMakeLists.txt.ori	2013-08-27 18:00:43.000000000 +0200
-+++ bamtools-2.3.0/src/api/CMakeLists.txt	2013-08-27 18:00:47.000000000 +0200
-@@ -54,8 +54,8 @@
- target_link_libraries( BamTools-static ${APILibs} )
- 
- # set library install destinations
--install( TARGETS BamTools        LIBRARY DESTINATION "lib/bamtools" RUNTIME DESTINATION "bin")
--install( TARGETS BamTools-static ARCHIVE DESTINATION "lib/bamtools")
-+install( TARGETS BamTools        LIBRARY DESTINATION "lib${LIB_SUFFIX}" RUNTIME DESTINATION "bin")
-+install( TARGETS BamTools-static ARCHIVE DESTINATION "lib${LIB_SUFFIX}")
- 
- # export API headers
- include(../ExportHeader.cmake)
---- bamtools-2.3.0/src/CMakeLists.txt.ori	2013-08-27 18:03:10.000000000 +0200
-+++ bamtools-2.3.0/src/CMakeLists.txt	2013-08-27 18:03:23.000000000 +0200
-@@ -6,7 +6,6 @@
- # ==========================
- 
- add_subdirectory( api )
--add_subdirectory( third_party )
- add_subdirectory( toolkit )
- add_subdirectory( utils )
- 
-- 
cgit v1.2.3-65-gdbad