From 7d62034735e700ca67e977470d79f5571b15b221 Mon Sep 17 00:00:00 2001 From: Justin Lecher Date: Mon, 26 Oct 2015 08:29:56 +0100 Subject: Drop "CCP4: Software for Macromolecular Crystallography" obsoletes: Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=160190 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=324059 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=332485 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367771 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367773 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=383227 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=448756 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460502 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460504 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=466936 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467040 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467048 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=476580 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478580 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478586 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478588 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478594 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478604 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=521646 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=528512 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=530878 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=540760 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=555614 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556498 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=557038 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=561196 Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=562780 Signed-off-by: Justin Lecher --- .../files/pdb-extract-3.004-cflags-install.patch | 199 --------------------- 1 file changed, 199 deletions(-) delete mode 100644 sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch (limited to 'sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch') diff --git a/sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch b/sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch deleted file mode 100644 index cdf48e4784c6..000000000000 --- a/sci-chemistry/pdb-extract/files/pdb-extract-3.004-cflags-install.patch +++ /dev/null @@ -1,199 +0,0 @@ -diff -Naur pdb-extract-v3.004-prod-src/Makefile pdb-extract-v3.004-prod-src.new/Makefile ---- pdb-extract-v3.004-prod-src/Makefile 2007-09-11 11:19:46.000000000 -0400 -+++ pdb-extract-v3.004-prod-src.new/Makefile 2009-12-03 21:34:10.000000000 -0500 -@@ -52,7 +52,7 @@ - echo "------------------------------------------------------------"; \ - echo "**** Making $$libdir ****"; \ - echo "------------------------------------------------------------"; \ -- (cd $$libdir && $(MAKE) -f $(MAKEFILE) "OPT=-O" install) || exit 1; \ -+ (cd $$libdir && $(MAKE) -f $(MAKEFILE) C_OPT="${CFLAGS}" CCC_OPT="${CXXFLAGS}" F_OPT="${FFLAGS}" LDFLAGS_OPT="${LDFLAGS}" install) || exit 1; \ - done - - beta: -diff -Naur pdb-extract-v3.004-prod-src/etc/make.platform.darwin3 pdb-extract-v3.004-prod-src.new/etc/make.platform.darwin3 ---- pdb-extract-v3.004-prod-src/etc/make.platform.darwin3 2007-09-11 11:19:46.000000000 -0400 -+++ pdb-extract-v3.004-prod-src.new/etc/make.platform.darwin3 2009-12-03 21:34:10.000000000 -0500 -@@ -91,7 +91,7 @@ - DEFINES=$(GDEFINES) $(LDEFINES) - - ## Global include directories --GINCLUDES= -+GINCLUDES=-I@GENTOO_PORTAGE_EPREFIX@/usr/include/cifparse-obj - - # Collect all include directories from global include directories and - # include directories specified in module makefile -@@ -159,7 +159,7 @@ - STATIC_LINKING= - - # Linker flags --LDFLAGS=$(ABI) -w $(STATIC_LINKING) -+LDFLAGS=$(LDFLAGS_OPT) $(ABI) -w $(STATIC_LINKING) - - # Fortran linker - F77_LINKER=f77 -diff -Naur pdb-extract-v3.004-prod-src/etc/make.platform.darwin4 pdb-extract-v3.004-prod-src.new/etc/make.platform.darwin4 ---- pdb-extract-v3.004-prod-src/etc/make.platform.darwin4 2007-09-11 11:19:46.000000000 -0400 -+++ pdb-extract-v3.004-prod-src.new/etc/make.platform.darwin4 2009-12-03 21:34:10.000000000 -0500 -@@ -92,7 +92,7 @@ - DEFINES=$(GDEFINES) $(LDEFINES) - - ## Global include directories --GINCLUDES= -+GINCLUDES=-I@GENTOO_PORTAGE_EPREFIX@/usr/include/cifparse-obj - - # Collect all include directories from global include directories and - # include directories specified in module makefile -@@ -160,7 +160,7 @@ - STATIC_LINKING= - - # Linker flags --LDFLAGS=$(ABI) -w $(STATIC_LINKING) -+LDFLAGS=$(LDFLAGS_OPT) $(ABI) -w $(STATIC_LINKING) - - # Fortran linker - F77_LINKER=f77 -diff -Naur pdb-extract-v3.004-prod-src/etc/make.platform.gnu3 pdb-extract-v3.004-prod-src.new/etc/make.platform.gnu3 ---- pdb-extract-v3.004-prod-src/etc/make.platform.gnu3 2007-09-11 11:19:46.000000000 -0400 -+++ pdb-extract-v3.004-prod-src.new/etc/make.platform.gnu3 2009-12-03 21:34:10.000000000 -0500 -@@ -6,6 +6,8 @@ - ## - ########################################################################## - -+LIBDIR=@GENTOO_PORTAGE_EPREFIX@/usr/GENTOOLIBDIR -+ - #-----Lexer and Parser section-------------------------------------------# - - # Lexer executable -@@ -89,7 +91,7 @@ - DEFINES=$(GDEFINES) $(LDEFINES) - - ## Global include directories --GINCLUDES= -+GINCLUDES=-I@GENTOO_PORTAGE_EPREFIX@/usr/include/cifparse-obj - - # Collect all include directories from global include directories and - # include directories specified in module makefile -@@ -107,8 +109,8 @@ - C_WARNINGS=$(WARNINGS) - - # C compiler flags --CFLAGS=$(OPT) $(ABI) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) --CFLAGS_NONANSI=$(OPT) $(ABI) $(NON_ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) \ -+CFLAGS=$(C_OPT) $(ABI) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) -+CFLAGS_NONANSI=$(C_OPT) $(ABI) $(NON_ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) \ - $(INCLUDES) - - ## C++ compiler -@@ -128,9 +130,9 @@ - EXT=C - - # C++ compiler flags --C++FLAGS=$(OPT) $(ABI) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) $(DEFINES) \ -+C++FLAGS=$(CCC_OPT) $(ABI) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) $(DEFINES) \ - $(INCLUDES) --C++FLAGS_NONANSI=$(OPT) $(ABI) $(NON_ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ -+C++FLAGS_NONANSI=$(CCC_OPT) $(ABI) $(NON_ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ - $(DEFINES) $(INCLUDES) - # C++FLAGS_RELAXED should be set to avoid warnings reported by third party - # source code that is not maintained by PDB -@@ -144,7 +146,7 @@ - F77=f77 - - # Fortran compiler flags --FFLAGS=-O -u -+FFLAGS=$(F_OPT) - - # Additional Fortran libraries - F77LIBS= -@@ -154,11 +156,11 @@ - #-----Linkers section----------------------------------------------------# - - # Static linking option. If not defined, dynamic linking is used. --STATIC_LINKING=-static -+STATIC_LINKING= - - # Linker flags --LDFLAGS=$(ABI) -w $(STATIC_LINKING) --LDFLAGS_NO_STATIC=$(ABI) -w -+LDFLAGS=$(LDFLAGS_OPT) $(ABI) -w $(STATIC_LINKING) -+LDFLAGS_NO_STATIC=$(LDFLAGS_OPT) $(ABI) -w - - # Fortran linker - F77_LINKER=f77 -diff -Naur pdb-extract-v3.004-prod-src/etc/make.platform.gnu4 pdb-extract-v3.004-prod-src.new/etc/make.platform.gnu4 ---- pdb-extract-v3.004-prod-src/etc/make.platform.gnu4 2007-09-11 11:19:46.000000000 -0400 -+++ pdb-extract-v3.004-prod-src.new/etc/make.platform.gnu4 2009-12-03 21:34:10.000000000 -0500 -@@ -6,6 +6,8 @@ - ## - ########################################################################## - -+LIBDIR=@GENTOO_PORTAGE_EPREFIX@/usr/GENTOOLIBDIR -+ - #-----Lexer and Parser section-------------------------------------------# - - # Lexer executable -@@ -34,7 +36,7 @@ - - # WARNINGS_AS_ERRORS defines flags to instruct all compilers to treat all - # warnings as errors. --WARNINGS_AS_ERRORS=-Werror -+WARNINGS_AS_ERRORS= - - # ALL_WARNINGS defines flags to instruct all compilers to report all - # warnings. -@@ -90,7 +92,7 @@ - DEFINES=$(GDEFINES) $(LDEFINES) - - ## Global include directories --GINCLUDES= -+GINCLUDES=-I@GENTOO_PORTAGE_EPREFIX@/usr/include/cifparse-obj - - # Collect all include directories from global include directories and - # include directories specified in module makefile -@@ -108,8 +110,8 @@ - C_WARNINGS=$(WARNINGS) - - # C compiler flags --CFLAGS=$(OPT) $(ABI) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) --CFLAGS_NONANSI=$(OPT) $(ABI) $(NON_ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) \ -+CFLAGS=$(C_OPT) $(ABI) $(ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) $(INCLUDES) -+CFLAGS_NONANSI=$(C_OPT) $(ABI) $(NON_ANSI_C_FLAG) $(C_WARNINGS) $(DEFINES) \ - $(INCLUDES) - - ## C++ compiler -@@ -129,9 +131,9 @@ - EXT=C - - # C++ compiler flags --C++FLAGS=$(OPT) $(ABI) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) $(DEFINES) \ -+C++FLAGS=$(CCC_OPT) $(ABI) $(ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) $(DEFINES) \ - $(INCLUDES) --C++FLAGS_NONANSI=$(OPT) $(ABI) $(NON_ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ -+C++FLAGS_NONANSI=$(CCC_OPT) $(ABI) $(NON_ANSI_C_PLUS_FLAG) $(C_PLUS_WARNINGS) \ - $(DEFINES) $(INCLUDES) - # C++FLAGS_RELAXED should be set to avoid warnings reported by third party - # source code that is not maintained by PDB -@@ -145,7 +147,7 @@ - F77=f77 - - # Fortran compiler flags --FFLAGS=-O -u -+FFLAGS=$(F_OPT) - - # Additional Fortran libraries - F77LIBS= -@@ -155,11 +157,11 @@ - #-----Linkers section----------------------------------------------------# - - # Static linking option. If not defined, dynamic linking is used. --STATIC_LINKING=-static -+STATIC_LINKING= - - # Linker flags --LDFLAGS=$(ABI) -w $(STATIC_LINKING) --LDFLAGS_NO_STATIC=$(ABI) -w -+LDFLAGS=$(LDFLAGS_OPT) $(ABI) -w $(STATIC_LINKING) -+LDFLAGS_NO_STATIC=$(LDFLAGS_OPT) $(ABI) -w - - # Fortran linker - F77_LINKER=f77 -- cgit v1.2.3-18-g5258