# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=6 inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs # latest git commit for R bash completion: https://github.com/deepayan/rcompletion BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6 DESCRIPTION="Language and environment for statistical computing and graphics" HOMEPAGE="http://www.r-project.org/" SRC_URI=" mirror://cran/src/base/R-3/${P}.tar.gz https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion" LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" SLOT="0" KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" CDEPEND=" app-arch/bzip2:0= app-arch/xz-utils:0= app-text/ghostscript-gpl >=dev-libs/libpcre-8.35:3= net-misc/curl virtual/blas:0 || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) icu? ( dev-libs/icu:= ) jpeg? ( virtual/jpeg:0 ) lapack? ( virtual/lapack:0 ) perl? ( dev-lang/perl ) png? ( media-libs/libpng:0= ) readline? ( sys-libs/readline:0= ) tiff? ( media-libs/tiff:0= ) tk? ( dev-lang/tk:0= ) X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" DEPEND="${CDEPEND} virtual/pkgconfig doc? ( virtual/latex-base dev-texlive/texlive-fontsrecommended )" RDEPEND="${CDEPEND} >=sys-libs/zlib-1.2.5.1-r2:0[minizip] java? ( >=virtual/jre-1.5 )" RESTRICT="minimal? ( test )" PATCHES=( "${FILESDIR}"/${PN}-3.4.1-parallel.patch "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch ) pkg_pretend() { [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp } pkg_setup() { if [[ ${MERGE_TYPE} != binary ]] && use openmp; then if ! tc-check-openmp; then ewarn "OpenMP is not available in your current selected compiler" die "need openmp capable compiler" fi FORTRAN_NEED_OPENMP=1 fi fortran-2_pkg_setup filter-ldflags -Wl,-Bdirect -Bdirect # avoid using existing R installation unset R_HOME # Temporary fix for bug #419761 if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then append-flags -fno-ipa-cp-clone fi } src_prepare() { default # fix packages.html for doc (gentoo bug #205103) sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ -i src/library/tools/R/Rd.R || die # fix Rscript path when installed (gentoo bug #221061) sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \ -i src/unix/Makefile.in || die "sed unix Makefile failed" # fix HTML links to manual (gentoo bug #273957) sed -e 's:\.\./manual/:manual/:g' \ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" use lapack && \ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" if use X; then export R_BROWSER="$(type -p xdg-open)" export R_PDFVIEWER="$(type -p xdg-open)" fi use perl && \ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" # don't search /usr/local sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die # Fix for Darwin (OS X) if use prefix; then if [[ ${CHOST} == *-darwin* ]] ; then sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ -e "/SHLIB_EXT/s/\.so/.dylib/" \ -i configure.ac || die # sort of "undo" 2.14.1-rmath-shared.patch sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ -i src/nmath/standalone/Makefile.in || die else append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" fi fi AT_M4DIR=m4 eautoreconf } src_configure() { # --with-system-tre \ # tre is patched from upstream econf \ --enable-byte-compiled-packages \ --enable-R-shlib \ --disable-R-framework \ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ --docdir="${EPREFIX}/usr/share/doc/${PF}" \ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ $(use_enable java) \ $(use_enable nls) \ $(use_enable openmp) \ $(use_enable profile R-profiling) \ $(use_enable profile memory-profiling) \ $(use_enable static-libs static) \ $(use_enable static-libs R-static-lib) \ $(use_with cairo) \ $(use_with icu ICU) \ $(use_with jpeg jpeglib) \ $(use_with lapack) \ $(use_with !minimal recommended-packages) \ $(use_with png libpng) \ $(use_with readline) \ $(use_with tiff libtiff) \ $(use_with tk tcltk) \ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \ $(use_with X x) } src_compile() { export VARTEXFONTS="${T}/fonts" emake AR="$(tc-getAR)" emake -C src/nmath/standalone \ shared $(use static-libs && echo static) AR="$(tc-getAR)" use doc && emake info pdf } src_install() { default emake -j1 -C src/nmath/standalone DESTDIR="${D}" install if use doc; then emake DESTDIR="${D}" install-info install-pdf dosym ../manual /usr/share/doc/${PF}/html/manual fi cat > 99R <<-EOF LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN} EOF doenvd 99R newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN} # The buildsystem has a different understanding of install_names than # we require. Since it builds modules like shared objects (wrong), many # objects (all modules) get an incorrect install_name. Fixing the build # system here is not really trivial. if [[ ${CHOST} == *-darwin* ]] ; then local mod pushd "${ED}"/usr/$(get_libdir)/R > /dev/null for mod in $(find . -name "*.dylib") ; do mod=${mod#./} install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \ "${mod}" done popd > /dev/null fi docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds} } pkg_postinst() { if use java; then einfo "Re-initializing java paths for ${P}" R CMD javareconf fi }