# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2

EAPI=6

PYTHON_COMPAT=( python2_7 python3_{4,5,6} )

inherit distutils-r1

DESCRIPTION="Python support for SAM/BAM/Bowtie/FASTA/Q/GFF/GTF files"
HOMEPAGE="https://htseq.readthedocs.io/"

if [[ ${PV} == *9999 ]]; then
	inherit git-r3
	EGIT_REPO_URI="https://github.com/simon-anders/htseq.git"
else
	SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
	KEYWORDS="~amd64"
fi

LICENSE="GPL-3+"
SLOT="0"

RDEPEND="
	dev-python/numpy[${PYTHON_USEDEP}]
	dev-python/matplotlib[${PYTHON_USEDEP}]
	sci-biology/pysam[${PYTHON_USEDEP}]"
DEPEND="
	${RDEPEND}
	>=dev-lang/swig-3.0.8
	dev-python/cython[${PYTHON_USEDEP}]"