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# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
PYTHON_COMPAT=( python2_7 )
inherit cmake-utils python-any-r1 versionator
DESCRIPTION="C++ Sequence Analysis Library"
HOMEPAGE="http://www.seqan.de/"
SRC_URI="http://packages.${PN}.de/${PN}-src/${PN}-src-${PV}.tar.gz"
SLOT="$(get_version_component_range 1-2)"
LICENSE="BSD GPL-3"
KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
IUSE="cpu_flags_x86_sse4_1 test"
REQUIRED_USE="cpu_flags_x86_sse4_1"
RDEPEND="
app-arch/bzip2
sys-libs/zlib"
DEPEND="
${RDEPEND}
test? (
$(python_gen_any_dep 'dev-python/nose[${PYTHON_USEDEP}]')
${PYTHON_DEPS}
)"
PATCHES=(
"${FILESDIR}/${P}-shared.patch"
"${FILESDIR}/${P}-include.patch"
"${FILESDIR}/${P}-buildsystem.patch"
)
pkg_setup() {
use test && python-any-r1_pkg_setup
}
src_prepare() {
# pkg-config file, taken from seqan 2.1
cp "${FILESDIR}"/${PN}.pc.in ${PN}-${SLOT}.pc || die
sed -e "s#@CMAKE_INSTALL_PREFIX@#${EPREFIX}/usr#" \
-e "s#includedir=\${prefix}/include#includedir=\${prefix}/include/${PN}-${SLOT}#" \
-e "s#@CMAKE_PROJECT_NAME@#${PN}#" \
-e "s#@SEQAN_VERSION_STRING@#${PV}#" \
-i ${PN}-${SLOT}.pc || die
rm -f util/cmake/FindZLIB.cmake || die
cmake-utils_src_prepare
}
src_configure() {
local mycmakeargs=(
-DBoost_NO_BOOST_CMAKE=ON
-DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY
-DSEQAN_NO_DOX=ON
)
cmake-utils_src_configure
}
src_install() {
cmake-utils_src_install
# SLOT header such that different seqan versions can be used in parallel
mkdir "${ED}"/usr/include/${PN}-${SLOT} || die
mv "${ED}"/usr/include/{${PN},${PN}-${SLOT}/} || die
# pkg-config file
insinto /usr/share/pkgconfig/
doins ${PN}-${SLOT}.pc
}
pkg_postinst() {
einfo "${CATEGORY}/${PF} is only intended as support library for older"
einfo "bioinformatics tools relying on the SeqAn 1.* API. Please develop"
einfo "any new software against the latest SeqAn release and not this one."
}
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