R_Overlay

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{'description': {'en': 'Gentoo overlay of R packages'},
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 'homepage': 'https://cgit.gentoo.org/proj/R_overlay.git/',
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 'name': 'R_Overlay',
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 'owner': [{'email': 'heroxbd@gentoo.org',
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            'name': 'Benda Xu',
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            'type': 'person'}],
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 'quality': 'experimental',
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 'source': [{'type': 'rsync',
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             'uri': 'rsync://roverlay.dev.gentoo.org/roverlay'}],
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 'status': 'official'}
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$ pmaint sync R_Overlay
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WARNING:pkgcore:repo lacks a defined name: '/var/lib/repo-mirror-ci/sync/swegener'
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WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/sync/genthree' has unsupported profile format: profile-bashrcs
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WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/sync/xelnor' has unsupported profile format: build-id
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WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/sync/xelnor' has unsupported profile format: build-id
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WARNING:pkgcore:repo lacks a defined name: '/var/lib/repo-mirror-ci/sync/swegener'
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*** syncing R_Overlay
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receiving incremental file list
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eclass/R-packages.eclass
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metadata/layout.conf
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metadata/md5-cache/
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metadata/md5-cache/sci-BIOC/
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metadata/md5-cache/sci-BIOC/COSMIC_67-1.6.0
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metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0
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metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0
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metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0
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metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9
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metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7
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metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7
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metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7
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metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7
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metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10
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metadata/md5-cache/sci-BIOC/pd_ath1_121501-3.12.0
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metadata/md5-cache/sci-BIOC/pd_canine_2-3.12.0
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metadata/md5-cache/sci-BIOC/pd_drosophila_2-3.12.0
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metadata/md5-cache/sci-BIOC/pd_e_coli_2-3.12.0
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metadata/md5-cache/sci-BIOC/pd_genomewidesnp_5-3.14.1
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metadata/md5-cache/sci-BIOC/pd_genomewidesnp_6-3.14.1
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metadata/md5-cache/sci-BIOC/pd_hg_u133_plus_2-3.12.0
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metadata/md5-cache/sci-BIOC/pd_hg_u133a_2-3.12.0
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metadata/md5-cache/sci-BIOC/pd_hta_2_0-3.12.1
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metadata/md5-cache/sci-BIOC/pd_mirna_1_0-3.12.0
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metadata/md5-cache/sci-BIOC/pd_mirna_2_0-3.12.0
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metadata/md5-cache/sci-BIOC/pd_mirna_3_0-3.12.0
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metadata/md5-cache/sci-BIOC/pd_mirna_3_1-3.8.1
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metadata/md5-cache/sci-BIOC/pd_mirna_4_0-3.12.0
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metadata/md5-cache/sci-BIOC/pd_mouse430_2-3.12.0
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metadata/md5-cache/sci-BIOC/pd_mouse430a_2-3.12.0
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metadata/md5-cache/sci-BIOC/pd_mta_1_0-3.12.0
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metadata/md5-cache/sci-BIOC/pd_rat230_2-3.12.0
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metadata/md5-cache/sci-BIOC/pd_rta_1_0-3.12.0
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metadata/md5-cache/sci-BIOC/pd_x_laevis_2-3.12.0
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metadata/md5-cache/sci-BIOC/pd_yeast_2-3.12.0
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metadata/md5-cache/sci-CRAN/
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metadata/md5-cache/sci-CRAN/EpiILMCT-1.1.3
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metadata/md5-cache/sci-CRAN/Haplin-7.1.0
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metadata/md5-cache/sci-CRAN/Map2NCBI-1.2
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metadata/md5-cache/sci-CRAN/cAIC4-0.8
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metadata/md5-cache/sci-CRAN/clustree-0.4.0
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metadata/md5-cache/sci-CRAN/eNetXplorer-1.0.2
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metadata/md5-cache/sci-CRAN/explor-0.3.5
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metadata/md5-cache/sci-CRAN/filehash-2.4.2
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metadata/md5-cache/sci-CRAN/gRc-0.4.3.2
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metadata/md5-cache/sci-CRAN/gamCopula-0.0.5
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metadata/md5-cache/sci-CRAN/geodist-0.0.3
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metadata/md5-cache/sci-CRAN/gjam-2.2.7
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metadata/md5-cache/sci-CRAN/httk-1.9.1
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metadata/md5-cache/sci-CRAN/hypergate-0.8.1
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metadata/md5-cache/sci-CRAN/motmot_2_0-1.1.2
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metadata/md5-cache/sci-CRAN/nzilbb_labbcat-0.2.0
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metadata/md5-cache/sci-CRAN/reactR-0.4.0
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metadata/md5-cache/sci-CRAN/taxotools-0.0.23
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metadata/md5-cache/sci-CRAN/transport-0.11.1
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metadata/md5-cache/sci-CRAN/wfe-1.9.1
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metadata/md5-cache/sci-CRAN/worldmet-0.8.7
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profiles/categories
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profiles/repo_name
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profiles/use.desc
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sci-BIOC/BSgenome_Athaliana_TAIR_04232008/BSgenome_Athaliana_TAIR_04232008-1.3.1000.ebuild
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sci-BIOC/BSgenome_Athaliana_TAIR_04232008/Manifest
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sci-BIOC/BSgenome_Athaliana_TAIR_04232008/metadata.xml
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sci-BIOC/BSgenome_Ecoli_NCBI_20080805/BSgenome_Ecoli_NCBI_20080805-1.3.1000.ebuild
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sci-BIOC/BSgenome_Ecoli_NCBI_20080805/Manifest
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sci-BIOC/BSgenome_Ecoli_NCBI_20080805/metadata.xml
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sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/BSgenome_Mfascicularis_NCBI_5_0-1.4.2.ebuild
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sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/Manifest
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sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/metadata.xml
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sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/BSgenome_Tgondii_ToxoDB_7_0-0.99.0.ebuild
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sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/Manifest
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sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/metadata.xml
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sci-BIOC/COSMIC_67/COSMIC_67-1.6.0.ebuild
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sci-BIOC/COSMIC_67/Manifest
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sci-BIOC/COSMIC_67/metadata.xml
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sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0.ebuild
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sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/Manifest
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sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/metadata.xml
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sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0.ebuild
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sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/Manifest
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sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/metadata.xml
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sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0.ebuild
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sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/Manifest
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sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/metadata.xml
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/Manifest
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9.ebuild
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/metadata.xml
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/Manifest
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7.ebuild
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/metadata.xml
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/Manifest
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7.ebuild
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/metadata.xml
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/Manifest
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7.ebuild
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/metadata.xml
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/Manifest
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7.ebuild
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/metadata.xml
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/Manifest
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10.ebuild
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sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/metadata.xml
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sci-BIOC/pd_ath1_121501/Manifest
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sci-BIOC/pd_ath1_121501/metadata.xml
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sci-BIOC/pd_ath1_121501/pd_ath1_121501-3.12.0.ebuild
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sci-BIOC/pd_canine_2/Manifest
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sci-BIOC/pd_canine_2/metadata.xml
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sci-BIOC/pd_canine_2/pd_canine_2-3.12.0.ebuild
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sci-BIOC/pd_drosophila_2/Manifest
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sci-BIOC/pd_drosophila_2/metadata.xml
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sci-BIOC/pd_drosophila_2/pd_drosophila_2-3.12.0.ebuild
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sci-BIOC/pd_e_coli_2/Manifest
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sci-BIOC/pd_e_coli_2/metadata.xml
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sci-BIOC/pd_e_coli_2/pd_e_coli_2-3.12.0.ebuild
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sci-BIOC/pd_genomewidesnp_5/Manifest
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sci-BIOC/pd_genomewidesnp_5/metadata.xml
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sci-BIOC/pd_genomewidesnp_5/pd_genomewidesnp_5-3.14.1.ebuild
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sci-BIOC/pd_genomewidesnp_6/Manifest
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sci-BIOC/pd_genomewidesnp_6/metadata.xml
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sci-BIOC/pd_genomewidesnp_6/pd_genomewidesnp_6-3.14.1.ebuild
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sci-BIOC/pd_hg_u133_plus_2/Manifest
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sci-BIOC/pd_hg_u133_plus_2/metadata.xml
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sci-BIOC/pd_hg_u133_plus_2/pd_hg_u133_plus_2-3.12.0.ebuild
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sci-BIOC/pd_hg_u133a_2/Manifest
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sci-BIOC/pd_hg_u133a_2/metadata.xml
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sci-BIOC/pd_hg_u133a_2/pd_hg_u133a_2-3.12.0.ebuild
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sci-BIOC/pd_hta_2_0/Manifest
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sci-BIOC/pd_hta_2_0/metadata.xml
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sci-BIOC/pd_hta_2_0/pd_hta_2_0-3.12.1.ebuild
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sci-BIOC/pd_mirna_1_0/Manifest
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sci-BIOC/pd_mirna_1_0/metadata.xml
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sci-BIOC/pd_mirna_1_0/pd_mirna_1_0-3.12.0.ebuild
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sci-BIOC/pd_mirna_2_0/Manifest
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sci-BIOC/pd_mirna_2_0/metadata.xml
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sci-BIOC/pd_mirna_2_0/pd_mirna_2_0-3.12.0.ebuild
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sci-BIOC/pd_mirna_3_0/Manifest
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sci-BIOC/pd_mirna_3_0/metadata.xml
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sci-BIOC/pd_mirna_3_0/pd_mirna_3_0-3.12.0.ebuild
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sci-BIOC/pd_mirna_3_1/Manifest
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sci-BIOC/pd_mirna_3_1/metadata.xml
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sci-BIOC/pd_mirna_3_1/pd_mirna_3_1-3.8.1.ebuild
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sci-BIOC/pd_mirna_4_0/Manifest
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sci-BIOC/pd_mirna_4_0/metadata.xml
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sci-BIOC/pd_mirna_4_0/pd_mirna_4_0-3.12.0.ebuild
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sci-BIOC/pd_mouse430_2/Manifest
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sci-BIOC/pd_mouse430_2/metadata.xml
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sci-BIOC/pd_mouse430_2/pd_mouse430_2-3.12.0.ebuild
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sci-BIOC/pd_mouse430a_2/Manifest
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sci-BIOC/pd_mouse430a_2/metadata.xml
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sci-BIOC/pd_mouse430a_2/pd_mouse430a_2-3.12.0.ebuild
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sci-BIOC/pd_mta_1_0/Manifest
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sci-BIOC/pd_mta_1_0/metadata.xml
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sci-BIOC/pd_mta_1_0/pd_mta_1_0-3.12.0.ebuild
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sci-BIOC/pd_rat230_2/Manifest
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sci-BIOC/pd_rat230_2/metadata.xml
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sci-BIOC/pd_rat230_2/pd_rat230_2-3.12.0.ebuild
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sci-BIOC/pd_rta_1_0/Manifest
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sci-BIOC/pd_rta_1_0/metadata.xml
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sci-BIOC/pd_rta_1_0/pd_rta_1_0-3.12.0.ebuild
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sci-BIOC/pd_x_laevis_2/Manifest
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sci-BIOC/pd_x_laevis_2/metadata.xml
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sci-BIOC/pd_x_laevis_2/pd_x_laevis_2-3.12.0.ebuild
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sci-BIOC/pd_yeast_2/Manifest
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sci-BIOC/pd_yeast_2/metadata.xml
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sci-BIOC/pd_yeast_2/pd_yeast_2-3.12.0.ebuild
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sci-CRAN/EpiILMCT/
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sci-CRAN/EpiILMCT/EpiILMCT-1.1.3.ebuild
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sci-CRAN/EpiILMCT/Manifest
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sci-CRAN/EpiILMCT/metadata.xml
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sci-CRAN/FuzzyNumbers_Ext_2/FuzzyNumbers_Ext_2-3.2.ebuild
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sci-CRAN/FuzzyNumbers_Ext_2/Manifest
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sci-CRAN/FuzzyNumbers_Ext_2/metadata.xml
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sci-CRAN/Haplin/
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sci-CRAN/Haplin/Haplin-7.1.0.ebuild
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sci-CRAN/Haplin/Manifest
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sci-CRAN/Haplin/metadata.xml
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sci-CRAN/Map2NCBI/
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sci-CRAN/Map2NCBI/Manifest
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sci-CRAN/Map2NCBI/Map2NCBI-1.2.ebuild
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sci-CRAN/Map2NCBI/metadata.xml
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sci-CRAN/cAIC4/
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sci-CRAN/cAIC4/Manifest
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sci-CRAN/cAIC4/cAIC4-0.8.ebuild
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sci-CRAN/cAIC4/metadata.xml
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sci-CRAN/clustree/
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sci-CRAN/clustree/Manifest
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sci-CRAN/clustree/clustree-0.4.0.ebuild
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sci-CRAN/clustree/metadata.xml
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sci-CRAN/eNetXplorer/
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sci-CRAN/eNetXplorer/Manifest
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sci-CRAN/eNetXplorer/eNetXplorer-1.0.2.ebuild
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sci-CRAN/eNetXplorer/metadata.xml
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sci-CRAN/explor/
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sci-CRAN/explor/Manifest
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sci-CRAN/explor/explor-0.3.5.ebuild
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sci-CRAN/explor/metadata.xml
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sci-CRAN/filehash/
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sci-CRAN/filehash/Manifest
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sci-CRAN/filehash/filehash-2.4.2.ebuild
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sci-CRAN/filehash/metadata.xml
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sci-CRAN/gRc/
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sci-CRAN/gRc/Manifest
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sci-CRAN/gRc/gRc-0.4.3.2.ebuild
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sci-CRAN/gRc/metadata.xml
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sci-CRAN/gamCopula/
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sci-CRAN/gamCopula/Manifest
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sci-CRAN/gamCopula/gamCopula-0.0.5.ebuild
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sci-CRAN/gamCopula/metadata.xml
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sci-CRAN/geodist/
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sci-CRAN/geodist/Manifest
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sci-CRAN/geodist/geodist-0.0.3.ebuild
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sci-CRAN/geodist/metadata.xml
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sci-CRAN/gjam/
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sci-CRAN/gjam/Manifest
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sci-CRAN/gjam/gjam-2.2.7.ebuild
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sci-CRAN/gjam/metadata.xml
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sci-CRAN/httk/
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sci-CRAN/httk/Manifest
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sci-CRAN/httk/httk-1.9.1.ebuild
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sci-CRAN/httk/metadata.xml
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sci-CRAN/hypergate/
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sci-CRAN/hypergate/Manifest
241
sci-CRAN/hypergate/hypergate-0.8.1.ebuild
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sci-CRAN/hypergate/metadata.xml
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sci-CRAN/motmot_2_0/Manifest
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sci-CRAN/motmot_2_0/metadata.xml
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sci-CRAN/motmot_2_0/motmot_2_0-1.1.2.ebuild
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sci-CRAN/nzilbb_labbcat/
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sci-CRAN/nzilbb_labbcat/Manifest
248
sci-CRAN/nzilbb_labbcat/metadata.xml
249
sci-CRAN/nzilbb_labbcat/nzilbb_labbcat-0.2.0.ebuild
250
sci-CRAN/reactR/
251
sci-CRAN/reactR/Manifest
252
sci-CRAN/reactR/metadata.xml
253
sci-CRAN/reactR/reactR-0.4.0.ebuild
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sci-CRAN/taxotools/
255
sci-CRAN/taxotools/Manifest
256
sci-CRAN/taxotools/metadata.xml
257
sci-CRAN/taxotools/taxotools-0.0.23.ebuild
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sci-CRAN/transport/
259
sci-CRAN/transport/Manifest
260
sci-CRAN/transport/metadata.xml
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sci-CRAN/transport/transport-0.11.1.ebuild
262
sci-CRAN/wfe/
263
sci-CRAN/wfe/Manifest
264
sci-CRAN/wfe/metadata.xml
265
sci-CRAN/wfe/wfe-1.9.1.ebuild
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sci-CRAN/worldmet/
267
sci-CRAN/worldmet/Manifest
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sci-CRAN/worldmet/metadata.xml
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sci-CRAN/worldmet/worldmet-0.8.7.ebuild
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Number of files: 164,067 (reg: 146,776, dir: 17,291)
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Number of created files: 40 (reg: 40)
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Number of deleted files: 0
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Number of regular files transferred: 228
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Total file size: 148.01M bytes
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Total transferred file size: 272.30K bytes
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Literal data: 272.30K bytes
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Matched data: 0 bytes
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File list size: 4.30M
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File list generation time: 0.001 seconds
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File list transfer time: 0.000 seconds
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Total bytes sent: 22.67K
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Total bytes received: 4.95M
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sent 22.67K bytes  received 4.95M bytes  1.42M bytes/sec
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total size is 148.01M  speedup is 29.75
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*** synced R_Overlay
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 * Sync succeeded
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$ stat --format=%y .
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$ pmaint regen --use-local-desc --pkg-desc-index -t 1 R_Overlay
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WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/repos/genthree' has unsupported profile format: profile-bashrcs
292
WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/repos/xelnor' has unsupported profile format: build-id
293
WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/repos/xelnor' has unsupported profile format: build-id
294
WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/repos/genthree' has unsupported profile format: profile-bashrcs
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WARNING:pkgcore:EAPI 7 isn't fully supported
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 * Cache regenerated successfully