1 | {'description': {'en': 'Gentoo overlay of R packages'},
|
2 | 'homepage': 'https://cgit.gentoo.org/proj/R_overlay.git/',
|
3 | 'name': 'R_Overlay',
|
4 | 'owner': [{'email': 'heroxbd@gentoo.org',
|
5 | 'name': 'Benda Xu',
|
6 | 'type': 'person'}],
|
7 | 'quality': 'experimental',
|
8 | 'source': [{'type': 'rsync',
|
9 | 'uri': 'rsync://roverlay.dev.gentoo.org/roverlay'}],
|
10 | 'status': 'official'}
|
11 | $ pmaint sync R_Overlay
|
12 | WARNING:pkgcore:repo lacks a defined name: '/var/lib/repo-mirror-ci/sync/swegener'
|
13 | WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/sync/genthree' has unsupported profile format: profile-bashrcs
|
14 | WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/sync/xelnor' has unsupported profile format: build-id
|
15 | WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/sync/xelnor' has unsupported profile format: build-id
|
16 | WARNING:pkgcore:repo lacks a defined name: '/var/lib/repo-mirror-ci/sync/swegener'
|
17 | *** syncing R_Overlay
|
18 | receiving incremental file list
|
19 | eclass/R-packages.eclass
|
20 | metadata/layout.conf
|
21 | metadata/md5-cache/
|
22 | metadata/md5-cache/sci-BIOC/
|
23 | metadata/md5-cache/sci-BIOC/COSMIC_67-1.6.0
|
24 | metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0
|
25 | metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0
|
26 | metadata/md5-cache/sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0
|
27 | metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9
|
28 | metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7
|
29 | metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7
|
30 | metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7
|
31 | metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7
|
32 | metadata/md5-cache/sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10
|
33 | metadata/md5-cache/sci-BIOC/pd_ath1_121501-3.12.0
|
34 | metadata/md5-cache/sci-BIOC/pd_canine_2-3.12.0
|
35 | metadata/md5-cache/sci-BIOC/pd_drosophila_2-3.12.0
|
36 | metadata/md5-cache/sci-BIOC/pd_e_coli_2-3.12.0
|
37 | metadata/md5-cache/sci-BIOC/pd_genomewidesnp_5-3.14.1
|
38 | metadata/md5-cache/sci-BIOC/pd_genomewidesnp_6-3.14.1
|
39 | metadata/md5-cache/sci-BIOC/pd_hg_u133_plus_2-3.12.0
|
40 | metadata/md5-cache/sci-BIOC/pd_hg_u133a_2-3.12.0
|
41 | metadata/md5-cache/sci-BIOC/pd_hta_2_0-3.12.1
|
42 | metadata/md5-cache/sci-BIOC/pd_mirna_1_0-3.12.0
|
43 | metadata/md5-cache/sci-BIOC/pd_mirna_2_0-3.12.0
|
44 | metadata/md5-cache/sci-BIOC/pd_mirna_3_0-3.12.0
|
45 | metadata/md5-cache/sci-BIOC/pd_mirna_3_1-3.8.1
|
46 | metadata/md5-cache/sci-BIOC/pd_mirna_4_0-3.12.0
|
47 | metadata/md5-cache/sci-BIOC/pd_mouse430_2-3.12.0
|
48 | metadata/md5-cache/sci-BIOC/pd_mouse430a_2-3.12.0
|
49 | metadata/md5-cache/sci-BIOC/pd_mta_1_0-3.12.0
|
50 | metadata/md5-cache/sci-BIOC/pd_rat230_2-3.12.0
|
51 | metadata/md5-cache/sci-BIOC/pd_rta_1_0-3.12.0
|
52 | metadata/md5-cache/sci-BIOC/pd_x_laevis_2-3.12.0
|
53 | metadata/md5-cache/sci-BIOC/pd_yeast_2-3.12.0
|
54 | metadata/md5-cache/sci-CRAN/
|
55 | metadata/md5-cache/sci-CRAN/EpiILMCT-1.1.3
|
56 | metadata/md5-cache/sci-CRAN/Haplin-7.1.0
|
57 | metadata/md5-cache/sci-CRAN/Map2NCBI-1.2
|
58 | metadata/md5-cache/sci-CRAN/cAIC4-0.8
|
59 | metadata/md5-cache/sci-CRAN/clustree-0.4.0
|
60 | metadata/md5-cache/sci-CRAN/eNetXplorer-1.0.2
|
61 | metadata/md5-cache/sci-CRAN/explor-0.3.5
|
62 | metadata/md5-cache/sci-CRAN/filehash-2.4.2
|
63 | metadata/md5-cache/sci-CRAN/gRc-0.4.3.2
|
64 | metadata/md5-cache/sci-CRAN/gamCopula-0.0.5
|
65 | metadata/md5-cache/sci-CRAN/geodist-0.0.3
|
66 | metadata/md5-cache/sci-CRAN/gjam-2.2.7
|
67 | metadata/md5-cache/sci-CRAN/httk-1.9.1
|
68 | metadata/md5-cache/sci-CRAN/hypergate-0.8.1
|
69 | metadata/md5-cache/sci-CRAN/motmot_2_0-1.1.2
|
70 | metadata/md5-cache/sci-CRAN/nzilbb_labbcat-0.2.0
|
71 | metadata/md5-cache/sci-CRAN/reactR-0.4.0
|
72 | metadata/md5-cache/sci-CRAN/taxotools-0.0.23
|
73 | metadata/md5-cache/sci-CRAN/transport-0.11.1
|
74 | metadata/md5-cache/sci-CRAN/wfe-1.9.1
|
75 | metadata/md5-cache/sci-CRAN/worldmet-0.8.7
|
76 | profiles/categories
|
77 | profiles/repo_name
|
78 | profiles/use.desc
|
79 | sci-BIOC/BSgenome_Athaliana_TAIR_04232008/BSgenome_Athaliana_TAIR_04232008-1.3.1000.ebuild
|
80 | sci-BIOC/BSgenome_Athaliana_TAIR_04232008/Manifest
|
81 | sci-BIOC/BSgenome_Athaliana_TAIR_04232008/metadata.xml
|
82 | sci-BIOC/BSgenome_Ecoli_NCBI_20080805/BSgenome_Ecoli_NCBI_20080805-1.3.1000.ebuild
|
83 | sci-BIOC/BSgenome_Ecoli_NCBI_20080805/Manifest
|
84 | sci-BIOC/BSgenome_Ecoli_NCBI_20080805/metadata.xml
|
85 | sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/BSgenome_Mfascicularis_NCBI_5_0-1.4.2.ebuild
|
86 | sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/Manifest
|
87 | sci-BIOC/BSgenome_Mfascicularis_NCBI_5_0/metadata.xml
|
88 | sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/BSgenome_Tgondii_ToxoDB_7_0-0.99.0.ebuild
|
89 | sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/Manifest
|
90 | sci-BIOC/BSgenome_Tgondii_ToxoDB_7_0/metadata.xml
|
91 | sci-BIOC/COSMIC_67/COSMIC_67-1.6.0.ebuild
|
92 | sci-BIOC/COSMIC_67/Manifest
|
93 | sci-BIOC/COSMIC_67/metadata.xml
|
94 | sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/MafDb_ALL_wgs_phase1_release_v3_20101123-3.2.0.ebuild
|
95 | sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/Manifest
|
96 | sci-BIOC/MafDb_ALL_wgs_phase1_release_v3_20101123/metadata.xml
|
97 | sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/MafDb_ALL_wgs_phase3_release_v5a_20130502-3.2.0.ebuild
|
98 | sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/Manifest
|
99 | sci-BIOC/MafDb_ALL_wgs_phase3_release_v5a_20130502/metadata.xml
|
100 | sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/MafDb_ALL_wgs_phase3_release_v5b_20130502-3.2.0.ebuild
|
101 | sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/Manifest
|
102 | sci-BIOC/MafDb_ALL_wgs_phase3_release_v5b_20130502/metadata.xml
|
103 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/Manifest
|
104 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/SNPlocs_Hsapiens_dbSNP_20090506-0.99.9.ebuild
|
105 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20090506/metadata.xml
|
106 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/Manifest
|
107 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/SNPlocs_Hsapiens_dbSNP_20100427-0.99.7.ebuild
|
108 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20100427/metadata.xml
|
109 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/Manifest
|
110 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/SNPlocs_Hsapiens_dbSNP_20101109-0.99.7.ebuild
|
111 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20101109/metadata.xml
|
112 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/Manifest
|
113 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/SNPlocs_Hsapiens_dbSNP_20110815-0.99.7.ebuild
|
114 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20110815/metadata.xml
|
115 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/Manifest
|
116 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/SNPlocs_Hsapiens_dbSNP_20111119-0.99.7.ebuild
|
117 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20111119/metadata.xml
|
118 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/Manifest
|
119 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/SNPlocs_Hsapiens_dbSNP_20120608-0.99.10.ebuild
|
120 | sci-BIOC/SNPlocs_Hsapiens_dbSNP_20120608/metadata.xml
|
121 | sci-BIOC/pd_ath1_121501/Manifest
|
122 | sci-BIOC/pd_ath1_121501/metadata.xml
|
123 | sci-BIOC/pd_ath1_121501/pd_ath1_121501-3.12.0.ebuild
|
124 | sci-BIOC/pd_canine_2/Manifest
|
125 | sci-BIOC/pd_canine_2/metadata.xml
|
126 | sci-BIOC/pd_canine_2/pd_canine_2-3.12.0.ebuild
|
127 | sci-BIOC/pd_drosophila_2/Manifest
|
128 | sci-BIOC/pd_drosophila_2/metadata.xml
|
129 | sci-BIOC/pd_drosophila_2/pd_drosophila_2-3.12.0.ebuild
|
130 | sci-BIOC/pd_e_coli_2/Manifest
|
131 | sci-BIOC/pd_e_coli_2/metadata.xml
|
132 | sci-BIOC/pd_e_coli_2/pd_e_coli_2-3.12.0.ebuild
|
133 | sci-BIOC/pd_genomewidesnp_5/Manifest
|
134 | sci-BIOC/pd_genomewidesnp_5/metadata.xml
|
135 | sci-BIOC/pd_genomewidesnp_5/pd_genomewidesnp_5-3.14.1.ebuild
|
136 | sci-BIOC/pd_genomewidesnp_6/Manifest
|
137 | sci-BIOC/pd_genomewidesnp_6/metadata.xml
|
138 | sci-BIOC/pd_genomewidesnp_6/pd_genomewidesnp_6-3.14.1.ebuild
|
139 | sci-BIOC/pd_hg_u133_plus_2/Manifest
|
140 | sci-BIOC/pd_hg_u133_plus_2/metadata.xml
|
141 | sci-BIOC/pd_hg_u133_plus_2/pd_hg_u133_plus_2-3.12.0.ebuild
|
142 | sci-BIOC/pd_hg_u133a_2/Manifest
|
143 | sci-BIOC/pd_hg_u133a_2/metadata.xml
|
144 | sci-BIOC/pd_hg_u133a_2/pd_hg_u133a_2-3.12.0.ebuild
|
145 | sci-BIOC/pd_hta_2_0/Manifest
|
146 | sci-BIOC/pd_hta_2_0/metadata.xml
|
147 | sci-BIOC/pd_hta_2_0/pd_hta_2_0-3.12.1.ebuild
|
148 | sci-BIOC/pd_mirna_1_0/Manifest
|
149 | sci-BIOC/pd_mirna_1_0/metadata.xml
|
150 | sci-BIOC/pd_mirna_1_0/pd_mirna_1_0-3.12.0.ebuild
|
151 | sci-BIOC/pd_mirna_2_0/Manifest
|
152 | sci-BIOC/pd_mirna_2_0/metadata.xml
|
153 | sci-BIOC/pd_mirna_2_0/pd_mirna_2_0-3.12.0.ebuild
|
154 | sci-BIOC/pd_mirna_3_0/Manifest
|
155 | sci-BIOC/pd_mirna_3_0/metadata.xml
|
156 | sci-BIOC/pd_mirna_3_0/pd_mirna_3_0-3.12.0.ebuild
|
157 | sci-BIOC/pd_mirna_3_1/Manifest
|
158 | sci-BIOC/pd_mirna_3_1/metadata.xml
|
159 | sci-BIOC/pd_mirna_3_1/pd_mirna_3_1-3.8.1.ebuild
|
160 | sci-BIOC/pd_mirna_4_0/Manifest
|
161 | sci-BIOC/pd_mirna_4_0/metadata.xml
|
162 | sci-BIOC/pd_mirna_4_0/pd_mirna_4_0-3.12.0.ebuild
|
163 | sci-BIOC/pd_mouse430_2/Manifest
|
164 | sci-BIOC/pd_mouse430_2/metadata.xml
|
165 | sci-BIOC/pd_mouse430_2/pd_mouse430_2-3.12.0.ebuild
|
166 | sci-BIOC/pd_mouse430a_2/Manifest
|
167 | sci-BIOC/pd_mouse430a_2/metadata.xml
|
168 | sci-BIOC/pd_mouse430a_2/pd_mouse430a_2-3.12.0.ebuild
|
169 | sci-BIOC/pd_mta_1_0/Manifest
|
170 | sci-BIOC/pd_mta_1_0/metadata.xml
|
171 | sci-BIOC/pd_mta_1_0/pd_mta_1_0-3.12.0.ebuild
|
172 | sci-BIOC/pd_rat230_2/Manifest
|
173 | sci-BIOC/pd_rat230_2/metadata.xml
|
174 | sci-BIOC/pd_rat230_2/pd_rat230_2-3.12.0.ebuild
|
175 | sci-BIOC/pd_rta_1_0/Manifest
|
176 | sci-BIOC/pd_rta_1_0/metadata.xml
|
177 | sci-BIOC/pd_rta_1_0/pd_rta_1_0-3.12.0.ebuild
|
178 | sci-BIOC/pd_x_laevis_2/Manifest
|
179 | sci-BIOC/pd_x_laevis_2/metadata.xml
|
180 | sci-BIOC/pd_x_laevis_2/pd_x_laevis_2-3.12.0.ebuild
|
181 | sci-BIOC/pd_yeast_2/Manifest
|
182 | sci-BIOC/pd_yeast_2/metadata.xml
|
183 | sci-BIOC/pd_yeast_2/pd_yeast_2-3.12.0.ebuild
|
184 | sci-CRAN/EpiILMCT/
|
185 | sci-CRAN/EpiILMCT/EpiILMCT-1.1.3.ebuild
|
186 | sci-CRAN/EpiILMCT/Manifest
|
187 | sci-CRAN/EpiILMCT/metadata.xml
|
188 | sci-CRAN/FuzzyNumbers_Ext_2/FuzzyNumbers_Ext_2-3.2.ebuild
|
189 | sci-CRAN/FuzzyNumbers_Ext_2/Manifest
|
190 | sci-CRAN/FuzzyNumbers_Ext_2/metadata.xml
|
191 | sci-CRAN/Haplin/
|
192 | sci-CRAN/Haplin/Haplin-7.1.0.ebuild
|
193 | sci-CRAN/Haplin/Manifest
|
194 | sci-CRAN/Haplin/metadata.xml
|
195 | sci-CRAN/Map2NCBI/
|
196 | sci-CRAN/Map2NCBI/Manifest
|
197 | sci-CRAN/Map2NCBI/Map2NCBI-1.2.ebuild
|
198 | sci-CRAN/Map2NCBI/metadata.xml
|
199 | sci-CRAN/cAIC4/
|
200 | sci-CRAN/cAIC4/Manifest
|
201 | sci-CRAN/cAIC4/cAIC4-0.8.ebuild
|
202 | sci-CRAN/cAIC4/metadata.xml
|
203 | sci-CRAN/clustree/
|
204 | sci-CRAN/clustree/Manifest
|
205 | sci-CRAN/clustree/clustree-0.4.0.ebuild
|
206 | sci-CRAN/clustree/metadata.xml
|
207 | sci-CRAN/eNetXplorer/
|
208 | sci-CRAN/eNetXplorer/Manifest
|
209 | sci-CRAN/eNetXplorer/eNetXplorer-1.0.2.ebuild
|
210 | sci-CRAN/eNetXplorer/metadata.xml
|
211 | sci-CRAN/explor/
|
212 | sci-CRAN/explor/Manifest
|
213 | sci-CRAN/explor/explor-0.3.5.ebuild
|
214 | sci-CRAN/explor/metadata.xml
|
215 | sci-CRAN/filehash/
|
216 | sci-CRAN/filehash/Manifest
|
217 | sci-CRAN/filehash/filehash-2.4.2.ebuild
|
218 | sci-CRAN/filehash/metadata.xml
|
219 | sci-CRAN/gRc/
|
220 | sci-CRAN/gRc/Manifest
|
221 | sci-CRAN/gRc/gRc-0.4.3.2.ebuild
|
222 | sci-CRAN/gRc/metadata.xml
|
223 | sci-CRAN/gamCopula/
|
224 | sci-CRAN/gamCopula/Manifest
|
225 | sci-CRAN/gamCopula/gamCopula-0.0.5.ebuild
|
226 | sci-CRAN/gamCopula/metadata.xml
|
227 | sci-CRAN/geodist/
|
228 | sci-CRAN/geodist/Manifest
|
229 | sci-CRAN/geodist/geodist-0.0.3.ebuild
|
230 | sci-CRAN/geodist/metadata.xml
|
231 | sci-CRAN/gjam/
|
232 | sci-CRAN/gjam/Manifest
|
233 | sci-CRAN/gjam/gjam-2.2.7.ebuild
|
234 | sci-CRAN/gjam/metadata.xml
|
235 | sci-CRAN/httk/
|
236 | sci-CRAN/httk/Manifest
|
237 | sci-CRAN/httk/httk-1.9.1.ebuild
|
238 | sci-CRAN/httk/metadata.xml
|
239 | sci-CRAN/hypergate/
|
240 | sci-CRAN/hypergate/Manifest
|
241 | sci-CRAN/hypergate/hypergate-0.8.1.ebuild
|
242 | sci-CRAN/hypergate/metadata.xml
|
243 | sci-CRAN/motmot_2_0/Manifest
|
244 | sci-CRAN/motmot_2_0/metadata.xml
|
245 | sci-CRAN/motmot_2_0/motmot_2_0-1.1.2.ebuild
|
246 | sci-CRAN/nzilbb_labbcat/
|
247 | sci-CRAN/nzilbb_labbcat/Manifest
|
248 | sci-CRAN/nzilbb_labbcat/metadata.xml
|
249 | sci-CRAN/nzilbb_labbcat/nzilbb_labbcat-0.2.0.ebuild
|
250 | sci-CRAN/reactR/
|
251 | sci-CRAN/reactR/Manifest
|
252 | sci-CRAN/reactR/metadata.xml
|
253 | sci-CRAN/reactR/reactR-0.4.0.ebuild
|
254 | sci-CRAN/taxotools/
|
255 | sci-CRAN/taxotools/Manifest
|
256 | sci-CRAN/taxotools/metadata.xml
|
257 | sci-CRAN/taxotools/taxotools-0.0.23.ebuild
|
258 | sci-CRAN/transport/
|
259 | sci-CRAN/transport/Manifest
|
260 | sci-CRAN/transport/metadata.xml
|
261 | sci-CRAN/transport/transport-0.11.1.ebuild
|
262 | sci-CRAN/wfe/
|
263 | sci-CRAN/wfe/Manifest
|
264 | sci-CRAN/wfe/metadata.xml
|
265 | sci-CRAN/wfe/wfe-1.9.1.ebuild
|
266 | sci-CRAN/worldmet/
|
267 | sci-CRAN/worldmet/Manifest
|
268 | sci-CRAN/worldmet/metadata.xml
|
269 | sci-CRAN/worldmet/worldmet-0.8.7.ebuild
|
270 |
|
271 | Number of files: 164,067 (reg: 146,776, dir: 17,291)
|
272 | Number of created files: 40 (reg: 40)
|
273 | Number of deleted files: 0
|
274 | Number of regular files transferred: 228
|
275 | Total file size: 148.01M bytes
|
276 | Total transferred file size: 272.30K bytes
|
277 | Literal data: 272.30K bytes
|
278 | Matched data: 0 bytes
|
279 | File list size: 4.30M
|
280 | File list generation time: 0.001 seconds
|
281 | File list transfer time: 0.000 seconds
|
282 | Total bytes sent: 22.67K
|
283 | Total bytes received: 4.95M
|
284 |
|
285 | sent 22.67K bytes received 4.95M bytes 1.42M bytes/sec
|
286 | total size is 148.01M speedup is 29.75
|
287 | *** synced R_Overlay
|
288 | * Sync succeeded
|
289 | $ stat --format=%y .
|
290 | $ pmaint regen --use-local-desc --pkg-desc-index -t 1 R_Overlay
|
291 | WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/repos/genthree' has unsupported profile format: profile-bashrcs
|
292 | WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/repos/xelnor' has unsupported profile format: build-id
|
293 | WARNING:pkgcore:'xelnor' repo at '/var/lib/repo-mirror-ci/repos/xelnor' has unsupported profile format: build-id
|
294 | WARNING:pkgcore:'genthree' repo at '/var/lib/repo-mirror-ci/repos/genthree' has unsupported profile format: profile-bashrcs
|
295 | WARNING:pkgcore:EAPI 7 isn't fully supported
|
296 | * Cache regenerated successfully
|