| 1 | {'description': {'en': 'The Gentoo Science Overlay is intended as a place to '
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| 2 | 'work\n'
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| 3 | ' outside of the main portage tree on experimental '
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| 4 | 'ebuilds. Our aim is to\n'
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| 5 | ' increase the rate of development of scientific '
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| 6 | 'packages for Gentoo, but\n'
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| 7 | ' ebuilds in this repository are by their very '
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| 8 | 'nature more experimental. If\n'
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| 9 | ' you wish to use them you should be willing to help '
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| 10 | 'test and report\n'
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| 11 | ' bugs. For contribution read '
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| 12 | 'https://wiki.gentoo.org/wiki/Project:Science/Contributing\n'
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| 13 | ' '},
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| 14 | 'feed': ['https://cgit.gentoo.org/proj/sci.git/atom/',
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| 15 | 'https://github.com/gentoo-science/sci/commits/master.atom'],
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| 16 | 'homepage': 'https://wiki.gentoo.org/wiki/Project:Science',
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| 17 | 'name': 'science',
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| 18 | 'owner': [{'email': 'sci@gentoo.org', 'name': 'sci', 'type': 'project'}],
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| 19 | 'quality': 'experimental',
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| 20 | 'source': [{'type': 'git',
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| 21 | 'uri': 'https://anongit.gentoo.org/git/proj/sci.git'},
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| 22 | {'type': 'git', 'uri': 'git://anongit.gentoo.org/proj/sci.git'},
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| 23 | {'type': 'git', 'uri': 'git+ssh://git@git.gentoo.org/proj/sci.git'},
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| 24 | {'type': 'git', 'uri': 'https://github.com/gentoo-science/sci.git'},
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| 25 | {'type': 'git', 'uri': 'git://github.com/gentoo-science/sci.git'},
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| 26 | {'type': 'git', 'uri': 'git@github.com:gentoo-science/sci.git'}],
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| 27 | 'status': 'official'}
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| 28 | $ pmaint sync science
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| 29 | warning: Pulling without specifying how to reconcile divergent branches is
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| 30 | discouraged. You can squelch this message by running one of the following
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| 31 | commands sometime before your next pull:
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| 32 |
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| 33 | git config pull.rebase false # merge (the default strategy)
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| 34 | git config pull.rebase true # rebase
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| 35 | git config pull.ff only # fast-forward only
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| 36 |
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| 37 | You can replace "git config" with "git config --global" to set a default
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| 38 | preference for all repositories. You can also pass --rebase, --no-rebase,
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| 39 | or --ff-only on the command line to override the configured default per
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| 40 | invocation.
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| 41 |
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| 42 | From https://anongit.gentoo.org/git/proj/sci
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| 43 | 562893ad1..e09a954bf master -> origin/master
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| 44 | Updating 562893ad1..e09a954bf
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| 45 | Fast-forward
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| 46 | sci-biology/gatk/files/settings.xml | 9 --
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| 47 | sci-biology/gatk/gatk-3.8.1.ebuild | 102 ---------------------
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| 48 | sci-biology/gatk/gatk-9999.ebuild | 82 -----------------
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| 49 | sci-biology/gatk/metadata.xml | 11 ---
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| 50 | sci-chemistry/chimera-bin/Manifest | 4 +-
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| 51 | .../chimera-bin/chimera-bin-1.11.2.ebuild | 14 +--
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| 52 | sci-chemistry/chimera-bin/chimera-bin-1.14.ebuild | 92 +++++++++++++++++++
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| 53 | sci-chemistry/mtz2hkl/Manifest | 1 -
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| 54 | sci-chemistry/mtz2hkl/files/0.3-gentoo.patch | 24 -----
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| 55 | sci-chemistry/mtz2hkl/metadata.xml | 8 --
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| 56 | sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild | 35 -------
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| 57 | sci-chemistry/mtz2sca/Manifest | 1 -
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| 58 | sci-chemistry/mtz2sca/files/0.3-gentoo.patch | 26 ------
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| 59 | sci-chemistry/mtz2sca/metadata.xml | 8 --
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| 60 | sci-chemistry/mtz2sca/mtz2sca-0.3.ebuild | 35 -------
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| 61 | sci-chemistry/nMOLDYN/Manifest | 1 -
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| 62 | sci-chemistry/nMOLDYN/metadata.xml | 12 ---
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| 63 | sci-chemistry/nMOLDYN/nMOLDYN-3.0.10.ebuild | 23 -----
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| 64 | 18 files changed, 99 insertions(+), 389 deletions(-)
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| 65 | delete mode 100644 sci-biology/gatk/files/settings.xml
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| 66 | delete mode 100644 sci-biology/gatk/gatk-3.8.1.ebuild
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| 67 | delete mode 100644 sci-biology/gatk/gatk-9999.ebuild
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| 68 | delete mode 100644 sci-biology/gatk/metadata.xml
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| 69 | create mode 100644 sci-chemistry/chimera-bin/chimera-bin-1.14.ebuild
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| 70 | delete mode 100644 sci-chemistry/mtz2hkl/Manifest
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| 71 | delete mode 100644 sci-chemistry/mtz2hkl/files/0.3-gentoo.patch
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| 72 | delete mode 100644 sci-chemistry/mtz2hkl/metadata.xml
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| 73 | delete mode 100644 sci-chemistry/mtz2hkl/mtz2hkl-0.3.ebuild
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| 74 | delete mode 100644 sci-chemistry/mtz2sca/Manifest
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| 75 | delete mode 100644 sci-chemistry/mtz2sca/files/0.3-gentoo.patch
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| 76 | delete mode 100644 sci-chemistry/mtz2sca/metadata.xml
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| 77 | delete mode 100644 sci-chemistry/mtz2sca/mtz2sca-0.3.ebuild
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| 78 | delete mode 100644 sci-chemistry/nMOLDYN/Manifest
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| 79 | delete mode 100644 sci-chemistry/nMOLDYN/metadata.xml
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| 80 | delete mode 100644 sci-chemistry/nMOLDYN/nMOLDYN-3.0.10.ebuild
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| 81 | *** syncing science
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| 82 | *** synced science
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| 83 | * Sync succeeded
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| 84 | $ git log --format=%ci -1
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| 85 | $ git show -q --pretty=format:%G? HEAD
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| 86 | $ pmaint regen --use-local-desc --pkg-desc-index -t 1 science
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| 87 | * Cache regenerated successfully
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