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http://bugs.gentoo.org/427862
http://bugs.gentoo.org/431064

--- Portage.pm
+++ Portage.pm
@@ -150,7 +150,7 @@
 }
 
 sub read_make_globals() {
-	for my $dir(@profiles, '/etc') {
+	for my $dir(@profiles, '/usr/share/portage/config') {
 		read_sh "$dir/make.globals";
 	}
 }