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| author |   Donnie Berkholz <donnie@supernova.(none)> | 2006-04-17 22:30:24 -0700 |
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| committer | Donnie Berkholz <donnie@supernova.(none)> | 2006-04-17 22:30:24 -0700 |
| commit | b084e8250f714a5d67587f1d43f40d5774d25643 (patch) | |
| tree | bc819fff34c32bd0c8c4c68df3a846f0b47316ca /sci-biology/paml | |
| download | dberkholz-b084e8250f714a5d67587f1d43f40d5774d25643.tar.gz dberkholz-b084e8250f714a5d67587f1d43f40d5774d25643.tar.bz2 dberkholz-b084e8250f714a5d67587f1d43f40d5774d25643.zip | |
Initial commit of portage overlay.
Diffstat (limited to 'sci-biology/paml')
| -rw-r--r-- | sci-biology/paml/Manifest | 6 | ||||
| -rw-r--r-- | sci-biology/paml/files/digest-paml-3.15 | 3 | ||||
| -rw-r--r-- | sci-biology/paml/paml-3.15.ebuild | 34 | ||||
| -rw-r--r-- | sci-biology/paml/rst | 0 | ||||
| -rw-r--r-- | sci-biology/paml/rst1 | 0 | ||||
| -rw-r--r-- | sci-biology/paml/rub | 0 |
6 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/paml/Manifest b/sci-biology/paml/Manifest new file mode 100644 index 0000000..9c14bea --- /dev/null +++ b/sci-biology/paml/Manifest @@ -0,0 +1,6 @@ +MD5 f88462efabd3504f45ae6c19819dde73 files/digest-paml-3.15 229 +RMD160 37e14b567c759a51fc732980a8cc6226a5aa53fe files/digest-paml-3.15 229 +SHA256 210e7b6e10e7e973a74f6c6b5c1923395cc6e09a5745c1b5a75aafd6085c4cb0 files/digest-paml-3.15 229 +MD5 8c94550fa5a6ab7ba3ab3aaf4045cd0b paml-3.15.ebuild 825 +RMD160 c5fa480f709eb9efb2e3a01e514aab0120c6a545 paml-3.15.ebuild 825 +SHA256 e08f4aac2cbc46058eca6c0b614a2193e524882c575a820aecd7977c72177c00 paml-3.15.ebuild 825 diff --git a/sci-biology/paml/files/digest-paml-3.15 b/sci-biology/paml/files/digest-paml-3.15 new file mode 100644 index 0000000..2f071b0 --- /dev/null +++ b/sci-biology/paml/files/digest-paml-3.15 @@ -0,0 +1,3 @@ +MD5 dc4bdbf59223be97d8fae247fa9e06d1 paml3.15.tar.gz 2390607 +RMD160 98ce55500113ad3447ac0a2129c358be03e63b96 paml3.15.tar.gz 2390607 +SHA256 a0f94ac1501a29836804d0ed586533eec1fd51c3b616c758bb9e55725eb8362f paml3.15.tar.gz 2390607 diff --git a/sci-biology/paml/paml-3.15.ebuild b/sci-biology/paml/paml-3.15.ebuild new file mode 100644 index 0000000..7fee096 --- /dev/null +++ b/sci-biology/paml/paml-3.15.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2005 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/app-misc/colordiff/colordiff-1.0.5-r2.ebuild,v 1.7 2005/08/17 18:08:02 grobian Exp $ + +inherit toolchain-funcs + +MY_P="${P/-}" +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${MY_P}.tar.gz" +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~x86" +IUSE="" +RDEPEND="" +DEPEND="${RDEPEND}" +S="${WORKDIR}/${MY_P}" + +src_compile() { + cd src + emake \ + -f Makefile.UNIX \ + CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" \ + || die "make failed" +} + +src_install() { + exeinto /usr/bin + pushd ${S}/src + doexe baseml codeml basemlg mcmctree pamp evolver yn00 chi2 + popd + dodoc README.txt doc/* +} diff --git a/sci-biology/paml/rst b/sci-biology/paml/rst new file mode 100644 index 0000000..e69de29 --- /dev/null +++ b/sci-biology/paml/rst diff --git a/sci-biology/paml/rst1 b/sci-biology/paml/rst1 new file mode 100644 index 0000000..e69de29 --- /dev/null +++ b/sci-biology/paml/rst1 diff --git a/sci-biology/paml/rub b/sci-biology/paml/rub new file mode 100644 index 0000000..e69de29 --- /dev/null +++ b/sci-biology/paml/rub |