| Commit message (Collapse) | Author | Age | Files | Lines | |
|---|---|---|---|---|---|
| * | imagej: add 1.44n. |   Donnie Berkholz | 2011-03-03 | 2 | -0/+118 |
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| * | jalview: Delete from overlay. | Donnie Berkholz | 2010-09-17 | 1 | -39/+0 |
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| * | probalign: fix for gcc 4.4 | Donnie Berkholz | 2010-08-17 | 2 | -13/+27 |
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| * | cytoscape: bump java-overlay version to 2.7, fix swingx dep. | Donnie Berkholz | 2010-06-04 | 1 | -0/+144 |
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| * | biopython: add a 1.54 beta ebuild. | Donnie Berkholz | 2010-05-01 | 8 | -142/+92 |
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| * | Add ebuild for CE, a protein structural alignment program. | Donnie Berkholz | 2009-07-24 | 2 | -0/+49 |
| | | | | | | | | CE: 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) method. The ebuild is a hack, the build system sucks, etc. | ||||
| * | biskit: a few fixups | Donnie Berkholz | 2009-07-10 | 2 | -2/+3 |
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| * | Add surfaceracer, for calculating solvent-accessible surface, etc. | Donnie Berkholz | 2009-07-10 | 2 | -0/+23 |
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| * | biskit: bump to 2.3.1 | Donnie Berkholz | 2009-07-10 | 2 | -32/+14 |
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| * | Add TMalign, commonly used to compare homology models to the real structures. | Donnie Berkholz | 2009-07-10 | 2 | -0/+27 |
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| * | foldx-bin: update for upstream packaging changes. | Donnie Berkholz | 2009-07-10 | 2 | -4/+4 |
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| * | Add biopython bumped to 1.51_beta. | Donnie Berkholz | 2009-07-01 | 8 | -0/+357 |
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| * | jalview: nice gui for bioinformatics. ebuild still WIP. | Donnie Berkholz | 2008-12-03 | 1 | -0/+39 |
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| * | biskit-9999: install tests. | Donnie Berkholz | 2008-04-29 | 2 | -1/+2 |
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| * | readseq: merged to gentoo-x86. | Donnie Berkholz | 2008-04-29 | 2 | -43/+0 |
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| * | biskit: add live-subversion ebuild. | Donnie Berkholz | 2008-04-29 | 2 | -0/+68 |
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| * | readseq: use my dev.g.o site for mirror. | Donnie Berkholz | 2008-04-25 | 2 | -2/+6 |
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| * | readseq: bump to java version, 20080420. | Donnie Berkholz | 2008-04-25 | 2 | -0/+39 |
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| * | sap: Structure Alignment Program. Required for some t-coffee operations. | Donnie Berkholz | 2008-04-15 | 2 | -0/+33 |
| | | | | | | Be careful, the license is basically nonexistent and some code is derived from Numerical Recipes. | ||||
| * | probalign: use TMPDIR variable for temporary files. | Donnie Berkholz | 2008-04-14 | 3 | -1/+52 |
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| * | Add foldx-bin, required for biskit. | Donnie Berkholz | 2008-04-14 | 2 | -0/+41 |
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| * | Add initial ebuild for biskit, a structural bioinformatics framework. | Donnie Berkholz | 2008-04-14 | 3 | -0/+86 |
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| * | probalign: refinements suggested by betelgeuse. | Donnie Berkholz | 2008-04-08 | 2 | -4/+2 |
| | | | | | | | Use java-pkg_getjars() to directly print classpath rather than symlinking the jar in with java-pkg_jar-from() and passing in the path to it. | ||||
| * | Add new alignment package, probalign. | Donnie Berkholz | 2008-04-08 | 4 | -0/+96 |
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| * | Merge mammoth to gentoo-x86 | Donnie Berkholz | 2008-01-08 | 6 | -101/+0 |
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| * | Add mammoth and mammoth-mult structural superimposition tools. | Donnie Berkholz | 2008-01-02 | 10 | -0/+174 |
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| * | poa: merged to gentoo-x86 | Donnie Berkholz | 2006-10-20 | 13 | -241/+0 |
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| * | poa: final QA checks for main tree | Donnie Berkholz | 2006-10-20 | 2 | -27/+24 |
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| * | paml, mafft: merged to gentoo-x86 | Donnie Berkholz | 2006-10-20 | 9 | -96/+0 |
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| * | paml: fix digest, change exeinto/doexe to dobin. | Donnie Berkholz | 2006-10-20 | 3 | -12/+25 |
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| * | mafft: bump to 5.861. lots of fixes, --auto flag, handles bigger lengths. | Donnie Berkholz | 2006-10-20 | 2 | -0/+32 |
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| * | mafft: drop old version | Donnie Berkholz | 2006-10-20 | 3 | -38/+8 |
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| * | Remove things in sync with gentoo-x86. |   Donnie Berkholz | 2006-04-24 | 41 | -933/+0 |
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| * | Initial commit of portage overlay. |   Donnie Berkholz | 2006-04-17 | 63 | -0/+1258 |
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