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# Copyright 1999-2007 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
inherit distutils
MY_P=${P/_/}
DESCRIPTION="A Python platform for structural bioinformatics"
HOMEPAGE="http://biskit.pasteur.fr/"
SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
# Core dependencies
RDEPEND="dev-python/numpy
sci-libs/netcdf
dev-python/scientificpython"
# Plotting
RDEPEND="${RDEPEND}
media-libs/plotutils
sci-visualization/gnuplot
>=dev-python/python-biggles-1.6.5"
# ROC areas
RDEPEND="${RDEPEND}
sci-libs/scipy"
# Homology modeling
RDEPEND="${RDEPEND}
sci-biology/biopython"
# Parallelization
RDEPEND="${RDEPEND}
sys-cluster/pypvm"
# Base package applications
RDEPEND="${RDEPEND}
sci-biology/ncbi-tools
=sci-biology/hmmer-2*
sci-biology/surfaceracer
sci-chemistry/pymol
sci-chemistry/dssp
sci-biology/foldx-bin
sci-chemistry/icm-browser"
# Biskit/Mod (homology modeling)
RDEPEND="${RDEPEND}
sci-biology/t-coffee
sci-chemistry/modeller
sci-biology/TMalign"
DEPEND="${RDEPEND}"
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