Adding for the purpose of testing Christian Becke's fix from bug #237634

svn path=/; revision=290

3 files changed, 0 insertions, 225 deletions

diff --git a/sci-chemistry/namd/files/digest-namd-2.6 b/sci-chemistry/namd/files/digest-namd-2.6
deleted file mode 100644
index 9726cd1..0000000
--- a/sci-chemistry/namd/files/digest-namd-2.6
+++ /dev/null
@@ -1,3 +0,0 @@
-MD5 c7d3b5101d1de0eca045e0d2f0ffffe3 NAMD_2.6_Source.tar.gz 8963319
-RMD160 186f79322226a20398031618011104a666237298 NAMD_2.6_Source.tar.gz 8963319
-SHA256 bf353ff13eae18b5a8dc33d79d295e9fe73fb87482858309b7695ce3e24f0d0b NAMD_2.6_Source.tar.gz 8963319
diff --git a/sci-chemistry/namd/files/namd-2.6-gentoo-amd64.patch b/sci-chemistry/namd/files/namd-2.6-gentoo-amd64.patch
deleted file mode 100644
index 9d65e51..0000000
--- a/sci-chemistry/namd/files/namd-2.6-gentoo-amd64.patch
+++ /dev/null
@@ -1,105 +0,0 @@
-diff -aurN NAMD_2.6_Source-orig/Makefile NAMD_2.6_Source/Makefile
---- NAMD_2.6_Source-orig/Makefile	2007-08-24 13:35:35.659265380 -0500
-+++ NAMD_2.6_Source/Makefile	2007-08-24 13:42:09.933733803 -0500
-@@ -232,10 +232,10 @@
- 	$(DSTDIR)/stringhash.o
- 
- # definitions for Charm routines
--CHARMC = $(CHARM)/bin/charmc
--CHARMXI = $(CHARM)/bin/charmc
--CHARMINC = $(CHARM)/include $(COPTD)CMK_OPTIMIZE=1
--CHARMLIB = $(CHARM)/lib
-+CHARMC = /usr/bin/charmc
-+CHARMXI = /usr/bin/charmc
-+CHARMINC = /usr/include/charm-9999 $(COPTD)CMK_OPTIMIZE=1
-+CHARMLIB = /usr/lib64
- 
- # Libraries we may have changed
- LIBS = $(PLUGINLIB) $(DPMTALIBS) $(DPMELIBS) $(TCLDLL)
-@@ -255,7 +255,7 @@
- 
- # Add new executables here.
- 
--BINARIES = namd2 psfgen charmrun flipdcd flipbinpdb
-+BINARIES = namd2 psfgen flipdcd flipbinpdb
- 
- # This should be rebuilt at every compile, but not on Win32.
- BUILDINFO = $(DSTDIR)/buildinfo
-@@ -284,11 +284,6 @@
- 	$(CHARMOPTS) \
- 	-lm -o namd2
- 
--charmrun: $(CHARM)/bin/charmrun # XXX
--	$(COPY) $(CHARM)/bin/charmrun $@
--
--windowsbinaries: namd2.exe psfgen.exe charmd.exe charmd_faceless.exe charmrun.exe
--
- namd2.exe:  $(INCDIR) $(DSTDIR) $(OBJS) $(LIBS)
- 	$(MAKEBUILDINFO)
- 	$(CHARMC) -verbose \
-@@ -309,9 +304,6 @@
- charmd_faceless.exe:
- 	$(COPY) $(CHARM)/bin/charmd_faceless.exe charmd_faceless.exe
- 
--charmrun.exe:
--	$(COPY) $(CHARM)/bin/charmrun.exe charmrun.exe
--
- psfgen:	$(DSTDIR) $(SBOBJS)
- 	$(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(TCLLIB) $(TCLAPPLIB) -lm
- 
-@@ -571,9 +563,7 @@
- 
- DOC_FILES = README.txt announce.txt license.txt notes.txt
- 
--RELEASE_FILES = flipdcd flipbinpdb psfgen charmrun namd2
--
--WIN32_RELEASE_FILES = namd2.exe psfgen.exe charmrun.exe charmd.exe charmd_faceless.exe $(TCLDLL)
-+RELEASE_FILES = flipdcd flipbinpdb psfgen namd2
- 
- release: all
- 	$(ECHO) Creating release $(RELEASE_DIR_NAME)
-@@ -582,17 +572,9 @@
- 	for f in $(DOC_FILES); do cp .rootdir/$$f $(RELEASE_DIR_NAME); done
- 	cp -r .rootdir/lib $(RELEASE_DIR_NAME)
- 	/bin/rm -rf $(RELEASE_DIR_NAME)/lib/CVS $(RELEASE_DIR_NAME)/lib/*/CVS
--	if [ -r $(CHARM)/bin/charmd ]; then \
--	  $(COPY) $(CHARM)/bin/charmd $(RELEASE_DIR_NAME); \
--	fi
--	if [ -r $(CHARM)/bin/charmd_faceless ]; then \
--	  $(COPY) $(CHARM)/bin/charmd_faceless $(RELEASE_DIR_NAME); \
--	fi
- 	chmod -R a+rX $(RELEASE_DIR_NAME)
- 	tar cf $(RELEASE_DIR_NAME).tar $(RELEASE_DIR_NAME)
- 	gzip $(RELEASE_DIR_NAME).tar
--	echo $(CHARM)
--	ls -l $(CHARM)/lib
- 	-for f in $(RELEASE_FILES); do echo $$f; $(LDD) $$f; done
- 
- winrelease: winall
-diff -aurN NAMD_2.6_Source-orig/arch/Linux-amd64.fftw NAMD_2.6_Source/arch/Linux-amd64.fftw
---- NAMD_2.6_Source-orig/arch/Linux-amd64.fftw	2007-08-24 13:35:35.663265610 -0500
-+++ NAMD_2.6_Source/arch/Linux-amd64.fftw	2007-08-24 13:43:45.623186828 -0500
-@@ -1,7 +1,6 @@
- 
--FFTDIR=/Projects/namd2/fftw/linux-amd64
--FFTINCL=-I$(FFTDIR)/include -I$(HOME)/fftw/include
--FFTLIB=-L$(FFTDIR)/lib -L$(HOME)/fftw/lib -lsrfftw -lsfftw
-+FFTINCL=-I/usr/include 
-+FFTLIB=-L/usr/lib64 -lsrfftw -lsfftw
- FFTFLAGS=-DNAMD_FFTW
- FFT=$(FFTINCL) $(FFTFLAGS)
- 
-diff -aurN NAMD_2.6_Source-orig/arch/Linux-amd64.tcl NAMD_2.6_Source/arch/Linux-amd64.tcl
---- NAMD_2.6_Source-orig/arch/Linux-amd64.tcl	2007-08-24 13:35:35.663265610 -0500
-+++ NAMD_2.6_Source/arch/Linux-amd64.tcl	2007-08-24 13:46:44.921404457 -0500
-@@ -1,7 +1,6 @@
- 
--TCLDIR=/Projects/namd2/tcl/linux-amd64
--TCLINCL=-I$(TCLDIR)/include -I$(HOME)/tcl/include
--TCLLIB=-L$(TCLDIR)/lib -L$(HOME)/tcl/lib -ltcl8.3 -ldl
--TCLFLAGS=-DNAMD_TCL
-+TCLINCL=-I/usr/include 
-+TCLLIB=-L/usr/lib64 -L$(HOME)/tcl/lib -ltcl -ldl
-+TCLFLAGS=-DNAMD_TCL -DUSE_NON_CONST
- TCL=$(TCLINCL) $(TCLFLAGS)
- 
diff --git a/sci-chemistry/namd/files/namd-2.7-gentoo.patch b/sci-chemistry/namd/files/namd-2.7-gentoo.patch
deleted file mode 100644
index 733ee8e..0000000
--- a/sci-chemistry/namd/files/namd-2.7-gentoo.patch
+++ /dev/null
@@ -1,117 +0,0 @@
-diff -aurN NAMD_2.7b1_Source.orig/Make.charm NAMD_2.7b1_Source/Make.charm
---- NAMD_2.7b1_Source.orig/Make.charm	2009-06-07 15:15:11.000000000 -0500
-+++ NAMD_2.7b1_Source/Make.charm	2009-06-07 15:15:11.000000000 -0500
-@@ -2,5 +2,5 @@
- # The config script will override this setting if there is a directory
- # called charm-6.1 or charm in the NAMD base directory.
- 
--CHARMBASE = /Projects/namd2/charm-6.1
-+CHARMBASE = /usr/include/charm-6.1.2
- 
-diff -aurN NAMD_2.7b1_Source.orig/Makefile NAMD_2.7b1_Source/Makefile
---- NAMD_2.7b1_Source.orig/Makefile	2009-06-07 15:15:11.000000000 -0500
-+++ NAMD_2.7b1_Source/Makefile	2009-06-07 15:15:11.000000000 -0500
-@@ -297,10 +297,10 @@
- 	$(DSTDIR)/stringhash.o
- 
- # definitions for Charm routines
--CHARMC = $(CHARM)/bin/charmc
--CHARMXI = $(CHARM)/bin/charmc
--CHARMINC = $(CHARM)/include $(COPTD)CMK_OPTIMIZE=1
--CHARMLIB = $(CHARM)/lib
-+CHARMC = /usr/bin/charmc
-+CHARMXI = /usr/bin/charmc
-+CHARMINC = /usr/include/gentoo-charm $(COPTD)CMK_OPTIMIZE=1
-+CHARMLIB = /usr/gentoo-libdir
- 
- # Libraries we may have changed
- LIBS = $(CUDAOBJS) $(PLUGINLIB) $(DPMTALIBS) $(DPMELIBS) $(TCLDLL)
-@@ -320,7 +320,7 @@
- 
- # Add new executables here.
- 
--BINARIES = namd2 psfgen charmrun flipdcd flipbinpdb
-+BINARIES = namd2 psfgen flipdcd flipbinpdb
- 
- # This should be rebuilt at every compile, but not on Win32.
- BUILDINFO = $(DSTDIR)/buildinfo
-@@ -351,14 +351,6 @@
- 	$(CHARMOPTS) \
- 	-lm -o namd2
- 
--charmrun: $(CHARM)/bin/charmrun # XXX
--	$(COPY) $(CHARM)/bin/charmrun $@
--
--WINDOWSBINARIES = namd2.exe psfgen.exe
--# WINDOWSBINARIES = namd2.exe psfgen.exe charmd.exe charmd_faceless.exe charmrun.exe
--
--windowsbinaries: $(WINDOWSBINARIES)
--
- namd2.exe:  $(INCDIR) $(DSTDIR) $(OBJS) $(LIBS) $(TCLDLL)
- 	$(MAKEBUILDINFO)
- 	$(CHARMC) -verbose \
-@@ -381,9 +373,6 @@
- charmd_faceless.exe:
- 	$(COPY) $(CHARM)/bin/charmd_faceless.exe charmd_faceless.exe
- 
--charmrun.exe:
--	$(COPY) $(CHARM)/bin/charmrun.exe charmrun.exe
--
- psfgen:	$(DSTDIR) $(SBOBJS) $(PLUGINOBJS)
- 	$(CC) $(SBCFLAGS) -o psfgen $(SBOBJS) $(PLUGINOBJS) $(TCLLIB) $(TCLAPPLIB) -lm
- 
-@@ -700,9 +689,7 @@
- 
- DOC_FILES = README.txt announce.txt license.txt notes.txt
- 
--RELEASE_FILES = flipdcd flipbinpdb psfgen charmrun namd2
--
--WINDOWS_RELEASE_FILES = $(WINDOWSBINARIES) $(TCLDLL)
-+RELEASE_FILES = flipdcd flipbinpdb psfgen namd2
- 
- release: all
- 	$(ECHO) Creating release $(RELEASE_DIR_NAME)
-@@ -711,17 +698,9 @@
- 	for f in $(DOC_FILES); do cp .rootdir/$$f $(RELEASE_DIR_NAME); done
- 	cp -r .rootdir/lib $(RELEASE_DIR_NAME)
- 	/bin/rm -rf $(RELEASE_DIR_NAME)/lib/CVS $(RELEASE_DIR_NAME)/lib/*/CVS
--	if [ -r $(CHARM)/bin/charmd ]; then \
--	  $(COPY) $(CHARM)/bin/charmd $(RELEASE_DIR_NAME); \
--	fi
--	if [ -r $(CHARM)/bin/charmd_faceless ]; then \
--	  $(COPY) $(CHARM)/bin/charmd_faceless $(RELEASE_DIR_NAME); \
--	fi
- 	chmod -R a+rX $(RELEASE_DIR_NAME)
- 	tar cf $(RELEASE_DIR_NAME).tar $(RELEASE_DIR_NAME)
- 	gzip $(RELEASE_DIR_NAME).tar
--	echo $(CHARM)
--	ls -l $(CHARM)/lib
- 	-for f in $(RELEASE_FILES); do echo $$f; $(LDD) $$f; done
- 
- winrelease: winall
-diff -aurN NAMD_2.7b1_Source.orig/arch/Linux-x86_64.fftw NAMD_2.7b1_Source/arch/Linux-x86_64.fftw
---- NAMD_2.7b1_Source.orig/arch/Linux-x86_64.fftw	2009-06-07 15:15:11.000000000 -0500
-+++ NAMD_2.7b1_Source/arch/Linux-x86_64.fftw	2009-06-07 15:15:11.000000000 -0500
-@@ -1,7 +1,7 @@
- 
--FFTDIR=/Projects/namd2/fftw/linux-x86_64
-+FFTDIR=/usr
- FFTINCL=-I$(FFTDIR)/include
--FFTLIB=-L$(FFTDIR)/lib -lsrfftw -lsfftw
-+FFTLIB=-L$(FFTDIR)/gentoo-libdir -lsrfftw -lsfftw
- FFTFLAGS=-DNAMD_FFTW
- FFT=$(FFTINCL) $(FFTFLAGS)
- 
-diff -aurN NAMD_2.7b1_Source.orig/arch/Linux-x86_64.tcl NAMD_2.7b1_Source/arch/Linux-x86_64.tcl
---- NAMD_2.7b1_Source.orig/arch/Linux-x86_64.tcl	2009-06-07 15:15:11.000000000 -0500
-+++ NAMD_2.7b1_Source/arch/Linux-x86_64.tcl	2009-06-07 18:25:07.000000000 -0500
-@@ -1,7 +1,7 @@
- 
--TCLDIR=/Projects/namd2/tcl/linux-x86_64
-+TCLDIR=/usr
- TCLINCL=-I$(TCLDIR)/include
--TCLLIB=-L$(TCLDIR)/lib -ltcl8.3 -ldl
-+TCLLIB=-L$(TCLDIR)/gentoo-libdir -ltcl8.5 -ldl
- TCLFLAGS=-DNAMD_TCL
- TCL=$(TCLINCL) $(TCLFLAGS)
-