Updated sci-biology/repbase ebuild to version 11.07 of the repbase

svn path=/stable/; revision=751

10 files changed, 15 insertions, 210 deletions

diff --git a/sci-biology/repbase/Manifest b/sci-biology/repbase/Manifest
index f727e94..f8fd4bc 100644
--- a/sci-biology/repbase/Manifest
+++ b/sci-biology/repbase/Manifest
@@ -1,9 +1,12 @@
-MD5 389a1a303497d5503f334e60466195a3 repbase-10.03.ebuild 1463
-MD5 91b78f561ed7a033faf48d1e4d5c68e3 repbase-10.04.ebuild 1456
-MD5 389a1a303497d5503f334e60466195a3 repbase-9.12.ebuild 1463
-MD5 24860972eb7dd95216a72d60acbd5d84 repbase-10.07.ebuild 1465
+AUX clean 1161 RMD160 30364cabf866fa59f84c676059efd70051bff63d SHA1 52db438e4fa04b708313acbffb8e8264b71c0908 SHA256 16c4a45c9a1802cd96aeceeb2c812a712bbb3b8ac815c7a8a3c5aa2d7365d918
 MD5 943163c2456b74490a384738b63d6d94 files/clean 1161
-MD5 6d3280263178010862efcb1b59c4c816 files/digest-repbase-10.03 71
-MD5 3d53f3eb616d7665c620cf1ff30f5f99 files/digest-repbase-10.04 71
-MD5 6d171b2224c472ad2ab93a3033b09c96 files/digest-repbase-9.12 70
-MD5 899787e1cc59fab954e7331592a2d857 files/digest-repbase-10.07 71
+RMD160 30364cabf866fa59f84c676059efd70051bff63d files/clean 1161
+SHA256 16c4a45c9a1802cd96aeceeb2c812a712bbb3b8ac815c7a8a3c5aa2d7365d918 files/clean 1161
+DIST RepBase11.07.fasta.tar.gz 5235379 RMD160 4b9e132cf6eba02e9b85a0a7cb19be9579e1a780 SHA1 430ff888645045d93ab2cb6a74d41eee1f6f9fc6 SHA256 b6c83fd2e2299a676a28e9558a926cea15e41a0fbf02034349897084743ccdae
+EBUILD repbase-11.07.ebuild 1441 RMD160 08c3dd21079efe89848f10ed429577fee83debda SHA1 a2c1a29e896eebd83c1e172dd294988a98456412 SHA256 627ac2663e94df8f3dcfc052aed0d2904b392386eea7a9549394c0df1816cfc4
+MD5 daa5695abcfaacbef909e14203c494e5 repbase-11.07.ebuild 1441
+RMD160 08c3dd21079efe89848f10ed429577fee83debda repbase-11.07.ebuild 1441
+SHA256 627ac2663e94df8f3dcfc052aed0d2904b392386eea7a9549394c0df1816cfc4 repbase-11.07.ebuild 1441
+MD5 97034ed5e586267a4fc5681d88c16b96 files/digest-repbase-11.07 259
+RMD160 ceec26a40a6eb337e3bebf96c1a9dfce52dcfecf files/digest-repbase-11.07 259
+SHA256 30aff83ae24f640aa370b863282b2feb5ba1952cb659541abe3008d8046dc63b files/digest-repbase-11.07 259
diff --git a/sci-biology/repbase/files/digest-repbase-10.03 b/sci-biology/repbase/files/digest-repbase-10.03
deleted file mode 100644
index c718f4e..0000000
--- a/sci-biology/repbase/files/digest-repbase-10.03
+++ /dev/null
@@ -1 +0,0 @@
-MD5 c530ff51d4f60a8ae2114f3185b0235f RepBase10.03.fasta.tar.gz 3530082
diff --git a/sci-biology/repbase/files/digest-repbase-10.04 b/sci-biology/repbase/files/digest-repbase-10.04
deleted file mode 100644
index ede3594..0000000
--- a/sci-biology/repbase/files/digest-repbase-10.04
+++ /dev/null
@@ -1 +0,0 @@
-MD5 76b1ac539ad79a64ab48904027631cea RepBase10.04.fasta.tar.gz 3562104
diff --git a/sci-biology/repbase/files/digest-repbase-10.07 b/sci-biology/repbase/files/digest-repbase-10.07
deleted file mode 100644
index 1a0810a..0000000
--- a/sci-biology/repbase/files/digest-repbase-10.07
+++ /dev/null
@@ -1 +0,0 @@
-MD5 54669e3eb561fa101903c681a594e2c7 RepBase10.07.fasta.tar.gz 4061677
diff --git a/sci-biology/repbase/files/digest-repbase-11.07 b/sci-biology/repbase/files/digest-repbase-11.07
new file mode 100644
index 0000000..e4f7bab
--- /dev/null
+++ b/sci-biology/repbase/files/digest-repbase-11.07
@@ -0,0 +1,3 @@
+MD5 e6aa2f719762cfd9faee56781a12848a RepBase11.07.fasta.tar.gz 5235379
+RMD160 4b9e132cf6eba02e9b85a0a7cb19be9579e1a780 RepBase11.07.fasta.tar.gz 5235379
+SHA256 b6c83fd2e2299a676a28e9558a926cea15e41a0fbf02034349897084743ccdae RepBase11.07.fasta.tar.gz 5235379
diff --git a/sci-biology/repbase/files/digest-repbase-9.12 b/sci-biology/repbase/files/digest-repbase-9.12
deleted file mode 100644
index 3188ee7..0000000
--- a/sci-biology/repbase/files/digest-repbase-9.12
+++ /dev/null
@@ -1 +0,0 @@
-MD5 fdf7cf4befd28b6b902da0f4a9263c72 RepBase9.12.fasta.tar.gz 3271264
diff --git a/sci-biology/repbase/repbase-10.03.ebuild b/sci-biology/repbase/repbase-10.03.ebuild
deleted file mode 100644
index 32f0e4f..0000000
--- a/sci-biology/repbase/repbase-10.03.ebuild
+++ /dev/null
@@ -1,65 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-CATEGORY="sci-biology"
-
-MY_P="RepBase${PV}.fasta"
-
-DESCRIPTION="A database of repetetive genetic elements in various organisms."
-HOMEPAGE="http://www.girinst.org"
-SRC_URI="${MY_P}.tar.gz"
-
-LICENSE="repbase-agreement"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE=""
-
-DEPEND=""
-RDEPEND=""
-
-RESTRICT="fetch"
-
-REPBASELOC="${HOMEPAGE}/server/RepBase/"
-
-REPLIBRARIES="
-angrep.ref=repeat_lib_A.gambiae
-cbrrep.ref=repeat_lib_C.briggsae
-celrep.ref=repeat_lib_C.elegans
-drorep.ref=repeat_lib_D.melanogaster
-fugrep.ref=repeat_lib_F.rubripes
-humrep.ref=repeat_lib_H.sapiens
-prirep.ref=repeat_lib_P.troglodyte
-rodrep.ref=repeat_lib_M.musculus
-rodrep.ref=repeat_lib_R.norvegicus
-zebrep.ref=repeat_lib_D.rerio
-"
-
-pkg_nofetch() 
-{
-    einfo "Please download ${SRC_URI}"
-    einfo "from ${REPBASELOC} and place it in ${DISTDIR}."
-    einfo "You will need to register as an academic user at"
-    einfo "${HOMEPAGE} in order to be"
-    einfo "allowed to download the file."
-}
-
-src_compile() 
-{
-    cp ${FILESDIR}/clean ${WORKDIR}
-    cd ${WORKDIR}
-    for lib in ${REPLIBRARIES}
-    do
-      einfo Cleaning library file ${lib/=*/} to ${lib/*=/}
-      ./clean ${MY_P}/${lib/=*/} ${lib/*=/} 
-    done
-}
-
-src_install() 
-{
-    cd ${WORKDIR}
-    install -m 755 -d ${D}/usr/share/${P}/
-    for lib in ${REPLIBRARIES}
-    do
-      install -m 644 ${lib/*=/} ${D}/usr/share/${P}/
-    done
-}
diff --git a/sci-biology/repbase/repbase-10.04.ebuild b/sci-biology/repbase/repbase-10.04.ebuild
deleted file mode 100644
index 90cfaa9..0000000
--- a/sci-biology/repbase/repbase-10.04.ebuild
+++ /dev/null
@@ -1,65 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-CATEGORY="sci-biology"
-
-MY_P="RepBase${PV}.fasta"
-
-DESCRIPTION="A database of repetetive genetic elements in various organisms."
-HOMEPAGE="http://www.girinst.org"
-SRC_URI="${MY_P}.tar.gz"
-
-LICENSE="repbase-agreement"
-SLOT="0"
-KEYWORDS="~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND=""
-
-RESTRICT="fetch"
-
-REPBASELOC="${HOMEPAGE}/server/RepBase/"
-
-REPLIBRARIES="
-angrep.ref=repeat_lib_A.gambiae
-cbrrep.ref=repeat_lib_C.briggsae
-celrep.ref=repeat_lib_C.elegans
-drorep.ref=repeat_lib_D.melanogaster
-fugrep.ref=repeat_lib_F.rubripes
-humrep.ref=repeat_lib_H.sapiens
-prirep.ref=repeat_lib_P.troglodyte
-rodrep.ref=repeat_lib_M.musculus
-rodrep.ref=repeat_lib_R.norvegicus
-zebrep.ref=repeat_lib_D.rerio
-"
-
-pkg_nofetch() 
-{
-    einfo "Please download ${SRC_URI}"
-    einfo "from ${REPBASELOC} and place it in ${DISTDIR}."
-    einfo "You will need to register as an academic user at"
-    einfo "${HOMEPAGE} in order to be"
-    einfo "allowed to download the file."
-}
-
-src_compile() 
-{
-    cp ${FILESDIR}/clean ${WORKDIR}
-    cd ${WORKDIR}
-    for lib in ${REPLIBRARIES}
-    do
-      einfo Cleaning library file ${lib/=*/} to ${lib/*=/}
-      ./clean ${MY_P}/${lib/=*/} ${lib/*=/} 
-    done
-}
-
-src_install() 
-{
-    cd ${WORKDIR}
-    install -m 755 -d ${D}/usr/share/${P}/
-    for lib in ${REPLIBRARIES}
-    do
-      install -m 644 ${lib/*=/} ${D}/usr/share/${P}/
-    done
-}
diff --git a/sci-biology/repbase/repbase-10.07.ebuild b/sci-biology/repbase/repbase-11.07.ebuild
index 50549fd..1e2e001 100644
--- a/sci-biology/repbase/repbase-10.07.ebuild
+++ b/sci-biology/repbase/repbase-11.07.ebuild
@@ -1,8 +1,6 @@
-# Copyright 1999-2005 Gentoo Foundation
+# Copyright 1999-2006 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-CATEGORY="sci-biology"
-
 MY_P="RepBase${PV}.fasta"
 
 DESCRIPTION="A database of repetetive genetic elements in various organisms."
diff --git a/sci-biology/repbase/repbase-9.12.ebuild b/sci-biology/repbase/repbase-9.12.ebuild
deleted file mode 100644
index 32f0e4f..0000000
--- a/sci-biology/repbase/repbase-9.12.ebuild
+++ /dev/null
@@ -1,65 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-CATEGORY="sci-biology"
-
-MY_P="RepBase${PV}.fasta"
-
-DESCRIPTION="A database of repetetive genetic elements in various organisms."
-HOMEPAGE="http://www.girinst.org"
-SRC_URI="${MY_P}.tar.gz"
-
-LICENSE="repbase-agreement"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE=""
-
-DEPEND=""
-RDEPEND=""
-
-RESTRICT="fetch"
-
-REPBASELOC="${HOMEPAGE}/server/RepBase/"
-
-REPLIBRARIES="
-angrep.ref=repeat_lib_A.gambiae
-cbrrep.ref=repeat_lib_C.briggsae
-celrep.ref=repeat_lib_C.elegans
-drorep.ref=repeat_lib_D.melanogaster
-fugrep.ref=repeat_lib_F.rubripes
-humrep.ref=repeat_lib_H.sapiens
-prirep.ref=repeat_lib_P.troglodyte
-rodrep.ref=repeat_lib_M.musculus
-rodrep.ref=repeat_lib_R.norvegicus
-zebrep.ref=repeat_lib_D.rerio
-"
-
-pkg_nofetch() 
-{
-    einfo "Please download ${SRC_URI}"
-    einfo "from ${REPBASELOC} and place it in ${DISTDIR}."
-    einfo "You will need to register as an academic user at"
-    einfo "${HOMEPAGE} in order to be"
-    einfo "allowed to download the file."
-}
-
-src_compile() 
-{
-    cp ${FILESDIR}/clean ${WORKDIR}
-    cd ${WORKDIR}
-    for lib in ${REPLIBRARIES}
-    do
-      einfo Cleaning library file ${lib/=*/} to ${lib/*=/}
-      ./clean ${MY_P}/${lib/=*/} ${lib/*=/} 
-    done
-}
-
-src_install() 
-{
-    cd ${WORKDIR}
-    install -m 755 -d ${D}/usr/share/${P}/
-    for lib in ${REPLIBRARIES}
-    do
-      install -m 644 ${lib/*=/} ${D}/usr/share/${P}/
-    done
-}