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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-03-24 23:49:31 +0100
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2017-03-24 23:49:31 +0100
commit8a773e1d1d08a4fed7fdbf65003f7a9b6f67abb4 (patch)
tree5cd46a29d71f6d21db70e52e756e7cabfe490d72
parentsci-biology/ncbi-tools++: continuing with linking patches (diff)
downloadsci-master.zip
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sci-biology/ncbi-tools++: add another patch (with an incomplete fix)HEADmaster
Package-Manager: Portage-2.3.3, Repoman-2.3.1
-rw-r--r--sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch13
-rw-r--r--sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild1
2 files changed, 14 insertions, 0 deletions
diff --git a/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch
new file mode 100644
index 0000000..0724fa2
--- /dev/null
+++ b/sci-biology/ncbi-tools++/files/ncbi-tools++-18.0.0-fix-srcchk-linking.patch
@@ -0,0 +1,13 @@
+--- ncbi_cxx--18_0_0/src/app/srcchk/Makefile.srcchk.app.ori 2017-03-24 04:08:42.723928634 +0100
++++ ncbi_cxx--18_0_0/src/app/srcchk/Makefile.srcchk.app 2017-03-24 04:10:00.687004260 +0100
+@@ -8,8 +8,8 @@
+
+ APP = srcchk
+ SRC = srcchk
+-LIB = xobjwrite variation_utils $(OBJREAD_LIBS) xalnmgr xobjutil \
+- gbseq entrez2cli entrez2 tables $(OBJMGR_LIBS)
++LIB = xobjwrite $(XFORMAT_LIBS) variation_utils $(OBJREAD_LIBS) xalnmgr \
++ xobjutil entrez2cli entrez2 tables $(OBJMGR_LIBS)
+
+ LIBS = $(CMPRS_LIBS) $(NETWORK_LIBS) $(DL_LIBS) $(ORIG_LIBS)
+
diff --git a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
index 3f3f4ef..f3bf993 100644
--- a/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
+++ b/sci-biology/ncbi-tools++/ncbi-tools++-18.0.0.ebuild
@@ -126,6 +126,7 @@ src_prepare() {
"${FILESDIR}"/${P}-fix-netstorage_gc-linking.patch
"${FILESDIR}"/${P}-fix-speedtest-linking.patch
"${FILESDIR}"/${P}-fix-splign-linking.patch
+ "${FILESDIR}"/${P}-fix-srcchk-linking.patch
)
#ncbi-tools++-18.0.0-fix-undefined-lxncbi.patch
epatch ${PATCHES[@]}