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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-03-23 16:01:39 +0100 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2019-03-23 16:01:39 +0100 |
| commit | 565f9b0c0ef3c2c6917d27a17495dbc279bc92de (patch) | |
| tree | 97ffc93a8640a74706d5df6d0600210d83d3f80b | |
| parent | dev-python/traits: version bump 5.0.0 (diff) | |
| download | sci-master.tar.gz sci-master.tar.bz2 sci-master.zip | |
Provided one specifies `--enable-static=no --enable-static-llvm=no` the
patch in
https://github.com/BoutrosLaboratory/bamql/commit/94417720bc7653a90cd9edd932ba6ba52d7bb89b
is really needed (as these two args are enough to compile bamql-1.6 and
llvm with only shared libs).
See https://github.com/BoutrosLaboratory/bamql/issues/14
Package-Manager: Portage-2.3.62, Repoman-2.3.12
Signed-off-by: Martin Mokrejs <mmokrejs@fold.natur.cuni.cz>
| -rw-r--r-- | sci-biology/bamql/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/bamql/bamql-1.6.ebuild (renamed from sci-biology/bamql/bamql-1.5.ebuild) | 15 | ||||
| -rw-r--r-- | sci-biology/bamql/bamql-9999.ebuild | 11 |
3 files changed, 21 insertions, 7 deletions
diff --git a/sci-biology/bamql/Manifest b/sci-biology/bamql/Manifest index 984d254f7..37ee319f9 100644 --- a/sci-biology/bamql/Manifest +++ b/sci-biology/bamql/Manifest @@ -1 +1 @@ -DIST bamql-1.5.tar.gz 64857 BLAKE2B 264653e2caffb7d82bb765eb6bcc5c4b4d25f0abda7c0baf5cbf92f656bc2a46a0d615c503e60ab95fda27862ab1590f4c8314f9d796b41ce665d10833d921ac SHA512 f2c690f6ad91c28c5993d385038e355d4cffbf1ee783cbf81a8459c2786d4406de0f310cc5f9d4abe9dc59bdd7a41442597fd5b34e7cc8db1af7bc9bd0ef089f +DIST bamql-1.6.tar.gz 63935 BLAKE2B 9e49878f47ff316e22a1c60f06a4e3b0472276a5d51dbc4d9569435b24d8d7e4f5433580a06bb3e9cc8c5c2e92408da665addb694806f49e97e1f276f52d0ec1 SHA512 7b3208f1afd08131f7e1223251fe6b13d60a2970d55daf82c7c3153d6f707ff71bad774b5e9da5def797fd260902916c82c12dd32c26051e5af92fd0457e9414 diff --git a/sci-biology/bamql/bamql-1.5.ebuild b/sci-biology/bamql/bamql-1.6.ebuild index ef78e3753..535b31f44 100644 --- a/sci-biology/bamql/bamql-1.5.ebuild +++ b/sci-biology/bamql/bamql-1.6.ebuild @@ -1,19 +1,19 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=6 -inherit autotools +inherit autotools eutils DESCRIPTION="Extract reads from BAM files" HOMEPAGE="https://github.com/BoutrosLaboratory/bamql https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1162-y" -SRC_URI="https://github.com/BoutrosLaboratory/bamql/archive/v1.5.tar.gz -> ${P}.tar.gz" +SRC_URI="https://github.com/BoutrosLaboratory/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" LICENSE="MIT" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" +IUSE="static-libs" DEPEND=" sys-devel/llvm:= @@ -26,3 +26,10 @@ src_prepare(){ eautoreconf default } + +src_configure(){ + local mycmakeargs=() + use static-libs && mycmakeargs+=( "--enable-static=yes" "--enable-static-llvm=yes" ) || \ + mycmakeargs+=( "--enable-static=no" "--enable-static-llvm=no" ) + econf ${mycmakeargs[@]} +} diff --git a/sci-biology/bamql/bamql-9999.ebuild b/sci-biology/bamql/bamql-9999.ebuild index 44a7d85f5..409804dc7 100644 --- a/sci-biology/bamql/bamql-9999.ebuild +++ b/sci-biology/bamql/bamql-9999.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2019 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 EAPI=6 @@ -13,7 +13,7 @@ EGIT_REPO_URI="https://github.com/BoutrosLaboratory/bamql.git" LICENSE="MIT" SLOT="0" KEYWORDS="" -IUSE="" +IUSE="static-libs" DEPEND=" sys-devel/llvm:= @@ -26,3 +26,10 @@ src_prepare(){ eautoreconf default } + +src_configure(){ + local mycmakeargs=() + use static-libs && mycmakeargs+=( "--enable-static=yes" "--enable-static-llvm=yes" ) || \ + mycmakeargs+=( "--enable-static=no" "--enable-static-llvm=no" ) + econf ${mycmakeargs[@]} +} |