aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
authorJustin Bronder <jsbronder@gentoo.org>2018-11-18 23:13:27 -0500
committerJustin Bronder <jsbronder@gentoo.org>2018-11-18 23:16:34 -0500
commit2c00a30e20f3fa293db9d0e4216369dff0e3beb0 (patch)
tree920b114968a6892a9b336ad3cf8a83de571e650e
parentsci-biology/mouse-brain-atlases: EAPI bump (diff)
downloadsci-master.tar.gz
sci-master.tar.bz2
sci-master.zip
sys-cluster/openmpi: bump 4.0.0HEADmaster
Also migrate to eapi7-ver. Blocked on going directly to EAPI 7 by java eclasses. Package-Manager: Portage-2.3.49, Repoman-2.3.11 Signed-off-by: Justin Bronder <jsbronder@gentoo.org>
-rw-r--r--sys-cluster/openmpi/Manifest1
-rw-r--r--sys-cluster/openmpi/openmpi-4.0.0.ebuild172
2 files changed, 173 insertions, 0 deletions
diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest
index 54574f85a..531395d8e 100644
--- a/sys-cluster/openmpi/Manifest
+++ b/sys-cluster/openmpi/Manifest
@@ -4,3 +4,4 @@ DIST openmpi-2.0.4.tar.bz2 8272983 BLAKE2B 7d0a392fbc8c896cdccefb9bf0ff83fbd8db8
DIST openmpi-2.1.5.tar.bz2 8323765 BLAKE2B 37da1ee31e540507efb466887997946b3b45f376aa6fb60341470fee257473543743b9e5651bf434288e45cdff6a0bfc3a521625a32c4946fdeee62ceafad9b1 SHA512 8b256c7019e11829dd1f235b7d98e0d135c8e92046a07dc70337c58498d946078f57434d0330d16c06d0e8c645d6f21fa8235d76da62f558ff01f68f6e69a4f1
DIST openmpi-3.0.3.tar.bz2 9316109 BLAKE2B e67e649917911eff3286c0f3d15e181b30e4ac6061891f6e13c75570368edb943fff55e4d41ffaa4a095b2060c84d24f8c32975758ad4632bae1813accd9f516 SHA512 12bbc5add4160e732ac10f302106c4bc2fa61ef2cde955e1fdd4a7aaad44b022d6babdd4bd529f687bb03fc5e5c3804ba6b1869e9609c9725bc291524c8304d7
DIST openmpi-3.1.3.tar.bz2 9442937 BLAKE2B 40067e1694a106d96e5ba41884a6facec9e605b5afba03ab908e4cf124f35b0691f0ab626e5190cffebc9c28d05b11b5c6401a5aa39ac17ec04650ed29e0976e SHA512 700821df676de5f85ce2793298242dcaea73f585f89540e30999792a568f193545a9f9b2bcb3ea22effa3bf14744531c4eb5fc4c84a8d7bbe5e5fdd76ab3a04a
+DIST openmpi-4.0.0.tar.bz2 9812193 BLAKE2B e5307c22ce4c9aac8d0efe5a659dfa79b4471020ece095e84026914eab8edf030b59bbac2a37405851a904aeb4d4b3a33ce8de4cd25218dcb9f37626a3540ff5 SHA512 978097dcbb16df2a616dcbbef9536fed0f7be40914daa8f927882d91bdda9265e54334fc12aeef49b41073d8782321b5611a7e9c71182258a45bca5f640e927b
diff --git a/sys-cluster/openmpi/openmpi-4.0.0.ebuild b/sys-cluster/openmpi/openmpi-4.0.0.ebuild
new file mode 100644
index 000000000..8e575946c
--- /dev/null
+++ b/sys-cluster/openmpi/openmpi-4.0.0.ebuild
@@ -0,0 +1,172 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+FORTRAN_NEEDED=fortran
+
+inherit cuda eapi7-ver flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib-minimal mpi
+
+MY_P=${P/-mpi}
+S=${WORKDIR}/${MY_P}
+
+IUSE_OPENMPI_FABRICS="
+ openmpi_fabrics_ofed
+ openmpi_fabrics_knem
+ openmpi_fabrics_psm"
+
+IUSE_OPENMPI_RM="
+ openmpi_rm_pbs
+ openmpi_rm_slurm"
+
+IUSE_OPENMPI_OFED_FEATURES="
+ openmpi_ofed_features_control-hdr-padding
+ openmpi_ofed_features_udcm
+ openmpi_ofed_features_rdmacm
+ openmpi_ofed_features_dynamic-sl"
+
+DESCRIPTION="A high-performance message passing library (MPI)"
+HOMEPAGE="http://www.open-mpi.org"
+SRC_URI="http://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux"
+IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java numa romio
+ ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
+
+REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
+ openmpi_rm_pbs? ( !openmpi_rm_slurm )
+ openmpi_fabrics_psm? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed )
+ openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )"
+
+MPI_UNCLASSED_DEP_STR="
+ !sys-cluster/pmix
+"
+
+CDEPEND="
+ >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads]
+ dev-libs/libltdl:0[${MULTILIB_USEDEP}]
+ >=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP},numa?]
+ >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}]
+ cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 )
+ elibc_FreeBSD? ( dev-libs/libexecinfo )
+ openmpi_fabrics_ofed? ( sys-fabric/ofed:* )
+ openmpi_fabrics_knem? ( sys-cluster/knem )
+ openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* )
+ openmpi_rm_pbs? ( sys-cluster/torque )
+ openmpi_rm_slurm? ( sys-cluster/slurm )
+ openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* )
+ $(mpi_imp_deplist)"
+
+RDEPEND="${CDEPEND}
+ java? ( >=virtual/jre-1.6 )"
+
+DEPEND="${CDEPEND}
+ java? ( >=virtual/jdk-1.6 )"
+
+MULTILIB_WRAPPED_HEADERS=(
+ /usr/include/mpi.h
+ /usr/include/openmpi/ompi/mpi/java/mpiJava.h
+)
+
+pkg_setup() {
+ fortran-2_pkg_setup
+ java-pkg-opt-2_pkg_setup
+ MPI_ESELECT_FILE="eselect.mpi.openmpi"
+
+ elog
+ elog "OpenMPI has an overwhelming count of configuration options."
+ elog "Don't forget the EXTRA_ECONF environment variable can let you"
+ elog "specify configure options if you find them necessary."
+ elog
+}
+
+src_prepare() {
+ default
+
+ # Necessary for scalibility, see
+ # http://www.open-mpi.org/community/lists/users/2008/09/6514.php
+ echo 'oob_tcp_listen_mode = listen_thread' \
+ >> opal/etc/openmpi-mca-params.conf || die
+}
+
+multilib_src_configure() {
+ if use java; then
+ # We must always build with the right -source and -target
+ # flags. Passing flags to javac isn't explicitly supported here
+ # but we can cheat by overriding the configure test for javac.
+ export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)"
+ fi
+
+ ECONF_SOURCE=${S} econf $(mpi_econf_args) \
+ --sysconfdir="${EPREFIX}/etc/${PN}" \
+ --enable-pretty-print-stacktrace \
+ --enable-orterun-prefix-by-default \
+ --with-hwloc="${EPREFIX}/usr" \
+ --with-libltdl="${EPREFIX}/usr" \
+ --with-libevent="${EPREFIX}/usr" \
+ --enable-mpi-fortran=$(usex fortran all no) \
+ $(use_enable cxx mpi-cxx) \
+ $(use_with cma) \
+ $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \
+ $(use_enable romio io-romio) \
+ $(use_enable heterogeneous) \
+ $(use_enable ipv6) \
+ $(multilib_native_use_enable java mpi-java) \
+ $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
+ $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \
+ $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \
+ $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \
+ $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \
+ $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \
+ $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \
+ $(multilib_native_use_with openmpi_rm_pbs tm) \
+ $(multilib_native_use_with openmpi_rm_slurm slurm)
+}
+
+multilib_src_test() {
+ # Doesn't work with the default src_test as the dry run (-n) fails.
+ emake -j1 check
+}
+
+multilib_src_install() {
+ default
+
+ # fortran header cannot be wrapped (bug #540508), workaround part 1
+ if multilib_is_native_abi && use fortran; then
+ mkdir "${T}"/fortran || die
+ mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die
+ else
+ # some fortran files get installed unconditionally
+ rm \
+ "${ED}"/$(mpi_root)/usr/include/mpif* \
+ "${ED}"/$(mpi_root)/usr/bin/mpif* \
+ "${ED}"/$(mpi_root)/usr/bin/oshfort \
+ "${ED}"/$(mpi_root)/usr/bin/shmemfort \
+ || die
+ fi
+}
+
+multilib_src_install_all() {
+ # fortran header cannot be wrapped (bug #540508), workaround part 2
+ if use fortran; then
+ mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die
+ fi
+
+ # Remove la files, no static libs are installed and we have pkg-config
+ find "${ED}" -name '*.la' -delete || die
+
+ if use java; then
+ local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar
+ java-pkg_dojar "${mpi_jar}"
+ # We don't want to install the jar file twice
+ # so let's clean after ourselves.
+ rm "${mpi_jar}" || die
+ fi
+
+ mpi_dodoc README AUTHORS NEWS VERSION
+ mpi_imp_add_eselect
+}