sci-libs/itk: bump to 4.12.0HEADmaster

Package-Manager: Portage-2.3.5, Repoman-2.3.1
Closes: https://github.com/gentoo/sci/pull/792

2 files changed, 137 insertions, 0 deletions

diff --git a/sci-libs/itk/Manifest b/sci-libs/itk/Manifest
index 7275013..e551400 100644
--- a/sci-libs/itk/Manifest
+++ b/sci-libs/itk/Manifest
@@ -1,4 +1,5 @@
 DIST DoxygenInsightToolkit-4.4.0.tar.gz 779393284 SHA256 a2e9a74dad840f6af7e3f3a518f43d75cad511d6b6b4b09d61f5b1b1b72d25c3 SHA512 9bdd6cedcdf5c30afb7f73130074983a56c397db776b927aae78b15a80d1158cca4563f92795d804ade34f4860b350cbbd157ed6924d53cb2ddfccf478e403c6 WHIRLPOOL 114f6ebb4052a8845559a9fa7f2883aa7bba90ff07dd7cd64d4e305e5ffdb35969b8b18b31b631e99d293fe06d95389359b23697544797a7703d9a973bd23246
 DIST DoxygenInsightToolkit-4.5.0.tar.gz 871324021 SHA256 bcc66662aa836cbb287a184870ba0aaf1b94e47d16d8e5d8bd2d30d77172781e SHA512 0bdf870c1600d847a635eefb8109dc12030387124de70c5c2b03f6a61bab796ce39c56792fcaa5779f741fce9c4d9bc621dcd70b389a805301e14c01422202a1 WHIRLPOOL 6315d22958bbfd7435d9948f1da6f3c1695abf441fc80b6c3545ad48cff42c4c0e871c091251c40cc7a2db422123304d4feaf08527c67236b34ced11c569487d
+DIST InsightToolkit-4.12.0.tar.xz 12246508 SHA256 3756898677cebc8cd1d3fa090b3dfce7313e928e38545cc18d6f851d5b63343f SHA512 b0ed1a9e02d238783edf68706ae9bdd23d2cf3e90274caa0f09faafab2d55729663a45f4ef4f5884f07a2160c5dcfb179ec445718b83e235007a0002a7e19e96 WHIRLPOOL a72a2798804225d434134a96bba18b65ca636aa9fdb7605e1e5515f9d3b5c51f06eb16d1d2a93a4b557e56544f674b901a3616550e30b9353fbcbe962bf7f58f
 DIST InsightToolkit-4.4.2.tar.gz 231905134 SHA256 071a7929c295b80bc8a6ab80d50c06cdfb0e6aafd936103c6d0a4a086cf8bec3 SHA512 c65beca4dd60aa769871bb3089cbb421729a2dcbd8bd3ec42c378ed60828e4327f1faf062f77bcca34306315a1daee6bc29d858dab9aea1c08f4843405fd21e3 WHIRLPOOL 4036bce61d0900ef2f1484ca06e9b513f6154c2233122e41fe694c648dd6eef53510749bf75368f9851a4dbd45777ca7033ad43f28c86259d5efae9e0d4200bd
 DIST InsightToolkit-4.5.1.tar.xz 212785824 SHA256 ba63342db9e0eafc43bb0a7fa76f99af255017d76da5eaef787f5c185bc8ee8d SHA512 a613d37236e3fad68bf83c023141cef72ebfd901ebe371157f474446e0b98fc291f8c5b82b7cb60f01868b78621b919d3602b3768272173e2fe3be96f0813dbb WHIRLPOOL dfbfb41a20df20bf691df88b138d4e7ed87153f73863cf1cd14e26c0ecc4ee7b9e43863edf62e03eef0c312f906881bf1f7c3482a393a3c69cb8badd3caa4f62
diff --git a/sci-libs/itk/itk-4.12.0.ebuild b/sci-libs/itk/itk-4.12.0.ebuild
new file mode 100644
index 0000000..a963374
--- /dev/null
+++ b/sci-libs/itk/itk-4.12.0.ebuild
@@ -0,0 +1,136 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit eutils toolchain-funcs cmake-utils python-single-r1
+
+MYPN=InsightToolkit
+MYP=${MYPN}-${PV}
+DOC_PV=4.5.0
+
+DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
+HOMEPAGE="http://www.itk.org"
+SRC_URI="mirror://sourceforge/${PN}/${MYP}.tar.xz
+	doc? ( mirror://sourceforge/${PN}/Doxygen${MYPN}-${DOC_PV}.tar.gz )"
+RESTRICT="primaryuri"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="debug doc examples +fftw itkv3compat python review cpu_flags_x86_sse2 test vtkglue"
+
+RDEPEND="
+	dev-libs/double-conversion:0=
+	media-libs/libpng:0=
+	media-libs/tiff:0=
+	sci-libs/dcmtk:0=
+	sci-libs/hdf5:0=[cxx]
+	sys-libs/zlib:0=
+	virtual/jpeg:0=
+	fftw? ( sci-libs/fftw:3.0= )
+	vtkglue? ( sci-libs/vtk:0=[python?] )
+"
+DEPEND="${RDEPEND}
+	python? (
+		${PYTHON_DEPS}
+		>=dev-lang/swig-2.0:0
+		>=dev-cpp/gccxml-0.9.0_pre20120309
+	)
+	doc? ( app-doc/doxygen )
+"
+
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
+
+S="${WORKDIR}/${MYP}"
+
+PATCHES=(
+	"${FILESDIR}/nrrdio-linking.patch"
+)
+
+get_memory() {
+	free --giga | grep Mem | cut -d ' ' -f 15 || die 'unable to get memory size'
+}
+
+src_configure() {
+	sed -i \
+		-e '/find_package/d' \
+		Modules/ThirdParty/DoubleConversion/CMakeLists.txt || die
+
+	local mycmakeargs=(
+		-DBUILD_SHARED_LIBS=ON
+		-DITK_USE_SYSTEM_DCMTK=ON
+		-DITK_USE_SYSTEM_DOUBLECONVERSION=ON
+		-DITK_USE_SYSTEM_HDF5=ON
+		-DITK_USE_SYSTEM_JPEG=ON
+		-DITK_USE_SYSTEM_PNG=ON
+		-DITK_USE_SYSTEM_SWIG=ON
+		-DITK_USE_SYSTEM_TIFF=ON
+		-DITK_USE_SYSTEM_ZLIB=ON
+		-DITK_BUILD_DEFAULT_MODULES=ON
+		-DITK_COMPUTER_MEMORY_SIZE="$(get_memory)"
+		-DITK_WRAP_JAVA=OFF
+		-DITK_WRAP_TCL=OFF
+		-DBUILD_TESTING=$(usex test)
+		-DBUILD_EXAMPLES=$(usex examples)
+		-DITK_USE_REVIEW=$(usex review)
+		-DITKV3_COMPATIBILITY=$(usex itkv3compat)
+		-DVNL_CONFIG_ENABLE_SSE2=$(usex cpu_flags_x86_sse2)
+	)
+	if use fftw; then
+		mycmakeargs+=(
+			-DUSE_FFTWD=ON
+			-DUSE_FFTWF=ON
+			-DUSE_SYSTEM_FFTW=ON
+			-DITK_USE_SYSTEM_FFTW=ON
+			-DITK_WRAPPING=ON
+			-DITK_WRAP_double=ON
+			-DITK_WRAP_vector_double=ON
+			-DITK_WRAP_covariant_vector_double=ON
+			-DITK_WRAP_complex_double=ON
+		)
+	fi
+	if use vtkglue; then
+		mycmakeargs+=(
+			-DModule_ITKVtkGlue=ON
+		)
+	fi
+	mycmakeargs+=(
+		-DITK_WRAP_PYTHON=$(usex python ON OFF)
+	)
+
+	cmake-utils_src_configure
+}
+
+src_install() {
+	cmake-utils_src_install
+
+	if use examples; then
+		insinto /usr/share/doc/${PF}/examples
+		docompress -x /usr/share/doc/${PF}/examples
+		doins -r "${S}"/Examples/*
+	fi
+
+	echo "ITK_DATA_ROOT=${EROOT%/}/usr/share/${PN}/data" > ${T}/40${PN}
+	local ldpath="${EROOT%/}/usr/$(get_libdir)/InsightToolkit"
+	if use python; then
+		echo "PYTHONPATH=${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN}
+		ldpath="${ldpath}:${EROOT%/}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
+	fi
+	echo "LDPATH=${ldpath}" >> "${T}"/40${PN}
+	doenvd "${T}"/40${PN}
+
+	if use doc; then
+		insinto /usr/share/doc/${PF}/api-docs
+		cd "${WORKDIR}"/html
+		rm  *.md5 || die "Failed to remove superfluous hashes"
+		einfo "Installing API docs. This may take some time."
+		insinto /usr/share/doc/${PF}/api-docs
+		doins -r *
+	fi
+
+	mv "${D}/usr/lib" "${D}/usr/$(get_libdir)" || \
+		die 'unable to fix libdir'
+}