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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-02 11:42:57 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-02 11:42:57 +0100 |
| commit | 03d288e4857b3934a4fac6693944c097da515a2b (patch) | |
| tree | 2bed574171cadf577100b199d28d60ba9dd21092 | |
| parent | sci-biology/nwalign3: fix python dependencies (diff) | |
| download | sci-03d288e4857b3934a4fac6693944c097da515a2b.tar.gz sci-03d288e4857b3934a4fac6693944c097da515a2b.tar.bz2 sci-03d288e4857b3934a4fac6693944c097da515a2b.zip | |
sci-biology/oases: EAPI bump, fix patch
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
| -rw-r--r-- | sci-biology/oases/files/Makefile.patch | 4 | ||||
| -rw-r--r-- | sci-biology/oases/oases-0.2.08.ebuild | 27 | ||||
| -rw-r--r-- | sci-biology/oases/oases-9999.ebuild | 24 |
3 files changed, 32 insertions, 23 deletions
diff --git a/sci-biology/oases/files/Makefile.patch b/sci-biology/oases/files/Makefile.patch index 58652b00e..fcd0842ff 100644 --- a/sci-biology/oases/files/Makefile.patch +++ b/sci-biology/oases/files/Makefile.patch @@ -1,5 +1,5 @@ ---- Makefile.ori 2016-04-10 22:34:31.976222662 +0200 -+++ Makefile 2016-04-10 22:37:49.636225327 +0200 +--- a/Makefile 2016-04-10 22:34:31.976222662 +0200 ++++ b/Makefile 2016-04-10 22:37:49.636225327 +0200 @@ -1,8 +1,8 @@ -CC = gcc -CFLAGS = -Wall diff --git a/sci-biology/oases/oases-0.2.08.ebuild b/sci-biology/oases/oases-0.2.08.ebuild index dcd1e83ab..74ad30f59 100644 --- a/sci-biology/oases/oases-0.2.08.ebuild +++ b/sci-biology/oases/oases-0.2.08.ebuild @@ -1,28 +1,35 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 - -inherit eutils +EAPI=7 DESCRIPTION="De novo transcriptome assembler" HOMEPAGE="http://www.ebi.ac.uk/~zerbino/oases" -SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/oases_0.2.08.tgz - http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf" -KEYWORDS="" +if [ "$PV" == "9999" ]; then + inherit git-r3 + EGIT_REPO_URI="https://github.com/dzerbino/oases.git" + SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf" +else + SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/oases_0.2.08.tgz + http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf" + S="${WORKDIR}/oases_0.2.8" + KEYWORDS="" + # fails to find globals.h, but which globals.h does it want? +fi LICENSE="GPL-3" SLOT="0" -IUSE="" DEPEND="" RDEPEND="${DEPEND} >=sci-biology/velvet-1.2.08" -S="${WORKDIR}"/oases_0.2.8 +PATCHES=( + "${FILESDIR}/Makefile.patch" +) src_prepare(){ - epatch "${FILESDIR}"/Makefile.patch + default sed -e 's#cleanobj velvet oases doc#oases#' -i Makefile || die } diff --git a/sci-biology/oases/oases-9999.ebuild b/sci-biology/oases/oases-9999.ebuild index fbbe6e6dd..74ad30f59 100644 --- a/sci-biology/oases/oases-9999.ebuild +++ b/sci-biology/oases/oases-9999.ebuild @@ -1,34 +1,36 @@ -# Copyright 1999-2018 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 - -[ "$PV" == "9999" ] && inherit git-r3 - -inherit eutils +EAPI=7 DESCRIPTION="De novo transcriptome assembler" HOMEPAGE="http://www.ebi.ac.uk/~zerbino/oases" if [ "$PV" == "9999" ]; then + inherit git-r3 EGIT_REPO_URI="https://github.com/dzerbino/oases.git" SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf" - KEYWORDS="" else SRC_URI="http://www.ebi.ac.uk/~zerbino/oases/oases_0.2.08.tgz - http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf" - KEYWORDS="~amd64" + http://www.ebi.ac.uk/~zerbino/oases/OasesManual.pdf" + S="${WORKDIR}/oases_0.2.8" + KEYWORDS="" + # fails to find globals.h, but which globals.h does it want? fi LICENSE="GPL-3" SLOT="0" -IUSE="" DEPEND="" RDEPEND="${DEPEND} >=sci-biology/velvet-1.2.08" +PATCHES=( + "${FILESDIR}/Makefile.patch" +) + src_prepare(){ - epatch "${FILESDIR}"/Makefile.patch + default + sed -e 's#cleanobj velvet oases doc#oases#' -i Makefile || die } src_install(){ |