Merge branch 'master' of git://git.overlays.gentoo.org/proj/sci; github.com:gentoo-science/sci

4 files changed, 651 insertions, 0 deletions

diff --git a/sci-libs/gsl/files/gsl-1.16-cblas-external.patch b/sci-libs/gsl/files/gsl-1.16-cblas-external.patch
index 7277aa42e..c29ef5294 100644
--- a/sci-libs/gsl/files/gsl-1.16-cblas-external.patch
+++ b/sci-libs/gsl/files/gsl-1.16-cblas-external.patch
@@ -207,6 +207,19 @@ diff -Nur gsl-1.16.orig/Makefile.am gsl-1.16/Makefile.am
  	-e 's|@LIBS[@]|$(LIBS)|g' \
  	-e 's|@VERSION[@]|$(VERSION)|g'
  
+--- gsl-1.16.orig/multifit/Makefile.am	2013-07-18 06:04:26.000000000 +1000
++++ gsl-1.16/multifit/Makefile.am	2013-11-22 16:57:26.170330257 +1100
+@@ -13,8 +13,8 @@
+ TESTS = $(check_PROGRAMS)
+ 
+ test_SOURCES = test.c
+-test_LDADD = libgslmultifit.la ../linalg/libgsllinalg.la ../permutation/libgslpermutation.la ../blas/libgslblas.la ../cblas/libgslcblas.la ../matrix/libgslmatrix.la ../sort/libgslsort.la ../statistics/libgslstatistics.la ../vector/libgslvector.la ../block/libgslblock.la  ../complex/libgslcomplex.la ../ieee-utils/libgslieeeutils.la ../err/libgslerr.la ../test/libgsltest.la ../utils/libutils.la ../sys/libgslsys.la
++test_LDADD = libgslmultifit.la ../linalg/libgsllinalg.la ../permutation/libgslpermutation.la ../blas/libgslblas.la @CBLAS_LINK_LIBS@ ../matrix/libgslmatrix.la ../sort/libgslsort.la ../statistics/libgslstatistics.la ../vector/libgslvector.la ../block/libgslblock.la  ../complex/libgslcomplex.la ../ieee-utils/libgslieeeutils.la ../err/libgslerr.la ../test/libgsltest.la ../utils/libutils.la ../sys/libgslsys.la
+ 
+ #demo_SOURCES = demo.c
+-#demo_LDADD = libgslmultifit.la ../linalg/libgsllinalg.la ../permutation/libgslpermutation.la ../blas/libgslblas.la ../cblas/libgslcblas.la ../matrix/libgslmatrix.la ../vector/libgslvector.la ../block/libgslblock.la ../randist/libgslrandist.la ../rng/libgslrng.la ../complex/libgslcomplex.la ../ieee-utils/libgslieeeutils.la ../err/libgslerr.la ../test/libgsltest.la ../utils/libutils.la ../sys/libgslsys.la
++#demo_LDADD = libgslmultifit.la ../linalg/libgsllinalg.la ../permutation/libgslpermutation.la ../blas/libgslblas.la @CBLAS_LINK_LIBS@ ../matrix/libgslmatrix.la ../vector/libgslvector.la ../block/libgslblock.la ../randist/libgslrandist.la ../rng/libgslrng.la ../complex/libgslcomplex.la ../ieee-utils/libgslieeeutils.la ../err/libgslerr.la ../test/libgsltest.la ../utils/libutils.la ../sys/libgslsys.la
+ 
 diff -Nur gsl-1.16.orig/multimin/Makefile.am gsl-1.16/multimin/Makefile.am
 --- gsl-1.16.orig/multimin/Makefile.am	2013-07-17 13:04:26.000000000 -0700
 +++ gsl-1.16/multimin/Makefile.am	2013-08-19 15:25:27.729497736 -0700
diff --git a/sys-cluster/charm/ChangeLog b/sys-cluster/charm/ChangeLog
index cab86a4e6..833fa0760 100644
--- a/sys-cluster/charm/ChangeLog
+++ b/sys-cluster/charm/ChangeLog
@@ -2,6 +2,19 @@
 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  22 Nov 2013; Nicolas Bock <nicolasbock@gmail.com> charm-6.6.0_rc1.ebuild:
+  sys-cluster/charm-6.6.0-rc1: Reorganized some variables.
+
+  20 Nov 2013; Nicolas Bock <nicolasbock@gmail.com>
+  +files/charm-6.6.0-static-library-fix.patch, charm-6.6.0_rc1.ebuild:
+  sys-cluster/charm-6.6.0_rc1: Rewrote patch to enable shared mode.  The patch
+  is targeted now for v6.7.0 by upstream.
+
+*charm-6.6.0_rc1 (20 Nov 2013)
+
+  20 Nov 2013; Nicolas Bock <nicolasbock@gmail.com> +charm-6.6.0_rc1.ebuild:
+  sys-cluster/charm-6.6.0_rc1: Version bump.
+
 *charm-6.5.1-r3 (08 Nov 2013)
 
   08 Nov 2013; Nicolas Bock <nicolasbock@gmail.com> +charm-6.5.1-r3.ebuild,
diff --git a/sys-cluster/charm/charm-6.6.0_rc1.ebuild b/sys-cluster/charm/charm-6.6.0_rc1.ebuild
new file mode 100644
index 000000000..7823e50e0
--- /dev/null
+++ b/sys-cluster/charm/charm-6.6.0_rc1.ebuild
@@ -0,0 +1,222 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sys-cluster/charm/charm-6.5.0.ebuild,v 1.1 2013/06/26 23:58:38 ottxor Exp $
+
+EAPI=5
+
+FORTRAN_STANDARD="90"
+PYTHON_COMPAT=( python{2_6,2_7} )
+
+inherit eutils flag-o-matic fortran-2 git-r3 multilib python-any-r1 toolchain-funcs
+
+DESCRIPTION="Message-passing parallel language and runtime system"
+HOMEPAGE="http://charm.cs.uiuc.edu/"
+SRC_URI=""
+
+EGIT_REPO_URI="http://charm.cs.uiuc.edu/gerrit/charm"
+EGIT_BRANCH="charm"
+EGIT_COMMIT="57051a8f07496b9f8f696f59fad477c8a2bc3e4d"
+
+LICENSE="charm"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="charmdebug charmtracing charmproduction cmkopt doc examples mlogft mpi numa smp static-libs syncft tcp"
+
+RDEPEND="mpi? ( virtual/mpi )"
+DEPEND="
+	${RDEPEND}
+	doc? (
+		>=app-text/poppler-0.12.3-r3[utils]
+		dev-tex/latex2html
+		virtual/tex-base
+		>=dev-python/beautifulsoup-4
+		dev-python/lxml
+		media-libs/netpbm
+		${PYTHON_DEPS}
+	)"
+
+REQUIRED_USE="
+	doc? ( ${PYTHON_REQ_USE} )
+	cmkopt? ( !charmdebug !charmtracing )
+	charmproduction? ( !charmdebug !charmtracing )"
+
+get_opts() {
+	local CHARM_OPTS
+
+	# TCP instead of default UDP for socket comunication
+	# protocol
+	CHARM_OPTS+="$(usex tcp ' tcp' '')"
+
+	# enable direct SMP support using shared memory
+	CHARM_OPTS+="$(usex smp ' smp' '')"
+
+	CHARM_OPTS+="$(usex mlogft ' mlogft' '')"
+	CHARM_OPTS+="$(usex syncft ' syncft' '')"
+
+	# Build shared libraries by default.
+	CHARM_OPTS+=" --build-shared"
+
+	if use charmproduction; then
+		CHARM_OPTS+=" --with-production"
+	else
+		if use charmdebug; then
+			CHARM_OPTS+=" --enable-charmdebug"
+		fi
+
+		if use charmtracing; then
+			CHARM_OPTS+=" --enable-tracing --enable-tracing-commthread"
+		fi
+	fi
+
+	CHARM_OPTS+="$(usex numa ' --with-numa' '')"
+
+	echo $CHARM_OPTS
+}
+
+src_prepare() {
+	sed \
+		-e "/CMK_CF77/s:[fg]77:$(usex mpi "mpif90" "$(tc-getF77)"):g" \
+		-e "/CMK_CF90/s:f95:$(usex mpi "mpif90" "$(tc-getFC)"):g" \
+		-e "/CMK_CF90/s:\`which f90.*$::g" \
+		-e "/CMK_CXX/s:g++:$(usex mpi "mpic++" "$(tc-getCXX)"):g" \
+		-e "/CMK_CC/s:gcc:$(usex mpi "mpicc" "$(tc-getCC)"):g" \
+		-e '/CMK_F90_MODINC/s:-p:-I:g' \
+		-e "/CMK_LD/s:\"$: ${LDFLAGS} \":g" \
+		-i src/arch/$(usex mpi "mpi" "net")*-linux*/*sh || die
+	sed \
+		-e "/CMK_CF90/s:gfortran:$(usex mpi "mpif90" "$(tc-getFC)"):g" \
+		-e "/F90DIR/s:gfortran:$(usex mpi "mpif90" "$(tc-getFC)"):g" \
+		-e "/f95target/s:gfortran:$(usex mpi "mpif90" "$(tc-getFC)"):g" \
+		-e "/f95version/s:gfortran:$(usex mpi "mpif90" "$(tc-getFC)"):g" \
+		-i src/arch/common/*.sh || die
+
+	sed \
+		-e "s:-o conv-cpm:${LDFLAGS} &:g" \
+		-e "s:-o charmxi:${LDFLAGS} &:g" \
+		-e "s:-o charmrun-silent:${LDFLAGS} &:g" \
+		-e "s:-o charmrun-notify:${LDFLAGS} &:g" \
+		-e "s:-o charmrun:${LDFLAGS} &:g" \
+		-e "s:-o charmd_faceless:${LDFLAGS} &:g" \
+		-e "s:-o charmd:${LDFLAGS} &:g" \
+		-i \
+		src/scripts/Makefile \
+		src/util/charmrun-src/Makefile || die
+
+	# CMK optimization
+	use cmkopt && append-cppflags -DCMK_OPTIMIZE=1
+
+	# Fix QA notice. Filed report with upstream.
+	append-cflags -DALLOCA_H
+
+	#epatch "${FILESDIR}/charm-6.5.1-cleanup-config.patch"
+	#epatch "${FILESDIR}/charm-6.5.1-CkReductionMgr.patch"
+	#epatch "${FILESDIR}/charm-6.5.1-fix-string-parsing.patch"
+	epatch "${FILESDIR}/charm-6.5.1-fix-navmenuGenerator.patch"
+	epatch "${FILESDIR}/charm-6.5.1-fix-markupSanitizer.patch"
+	epatch "${FILESDIR}/charm-6.6.0-static-library-fix.patch"
+}
+
+src_compile() {
+	local build_version="$(usex mpi "mpi" "net")-linux$(usex amd64 "-amd64" '')"
+	local build_options="$(get_opts)"
+	local build_charmc_options="${MAKEOPTS} -j1"
+	local build_commandline="${build_version} ${build_options} ${build_charmc_options}"
+
+	# Build charmm++ first.
+	einfo "running ./build charm++ ${build_commandline}"
+	./build charm++ ${build_commandline} || die "Failed to build charm++"
+
+	# make pdf/html docs
+	if use doc; then
+		emake -j1 -C doc/charm++
+	fi
+}
+
+src_test() {
+	make -C tests/charm++ test TESTOPTS="++local" || die
+}
+
+src_install() {
+	# Make charmc play well with gentoo before we move it into /usr/bin. This
+	# patch cannot be applied during src_prepare() because the charmc wrapper
+	# is used during building.
+	epatch "${FILESDIR}/charm-6.5.1-charmc-gentoo.patch"
+
+	sed -e "s|gentoo-include|${P}|" \
+		-e "s|gentoo-libdir|$(get_libdir)|g" \
+		-e "s|VERSION|${P}/VERSION|" \
+		-i ./src/scripts/charmc || die "failed patching charmc script"
+
+	# In the following, some of the files are symlinks to ../tmp which we need
+	# to dereference first (see bug 432834).
+
+	local i
+
+	# Install binaries.
+	for i in bin/*; do
+		if [[ -L ${i} ]]; then
+			i=$(readlink -e "${i}") || die
+		fi
+		dobin "${i}"
+	done
+
+	# Install headers.
+	insinto /usr/include/${P}
+	for i in include/*; do
+		if [[ -L ${i} ]]; then
+			i=$(readlink -e "${i}") || die
+		fi
+		doins "${i}"
+	done
+
+	# Install static libs. Charm has a lot of .o "libs" that it requires at
+	# runtime.
+	if use static-libs; then
+		for i in lib/*.{a,o}; do
+			if [[ -L ${i} ]]; then
+				i=$(readlink -e "${i}") || die
+			fi
+			dolib "${i}"
+		done
+	fi
+
+	# Install shared libs.
+	for i in lib_so/*; do
+		if [[ -L ${i} ]]; then
+			i=$(readlink -e "${i}") || die
+		fi
+		dolib.so "${i}"
+	done
+
+	# Basic docs.
+	dodoc CHANGES README
+
+	# Install examples.
+	if use examples; then
+		find examples/ -name 'Makefile' | xargs sed \
+			-r "s:(../)+bin/charmc:/usr/bin/charmc:" -i || \
+			die "Failed to fix examples"
+		find examples/ -name 'Makefile' | xargs sed \
+			-r "s:./charmrun:./charmrun ++local:" -i || \
+			die "Failed to fix examples"
+		insinto /usr/share/doc/${PF}/examples
+		doins -r examples/charm++/*
+	fi
+
+	# Install pdf/html docs
+	if use doc; then
+		cd "${S}/doc/charm++"
+		# Install pdfs.
+		insinto /usr/share/doc/${PF}/pdf
+		doins  *.pdf
+		# Install html.
+		docinto html
+		dohtml -r manual/*
+	fi
+}
+
+pkg_postinst() {
+	einfo "Please test your charm installation by copying the"
+	einfo "content of /usr/share/doc/${PF}/examples to a"
+	einfo "temporary location and run 'make test'."
+}
diff --git a/sys-cluster/charm/files/charm-6.6.0-static-library-fix.patch b/sys-cluster/charm/files/charm-6.6.0-static-library-fix.patch
new file mode 100644
index 000000000..1281a6515
--- /dev/null
+++ b/sys-cluster/charm/files/charm-6.6.0-static-library-fix.patch
@@ -0,0 +1,403 @@
+From 5885fa33575116c8d5c8e6e2e4beb007279a7fdb Mon Sep 17 00:00:00 2001
+From: Nicolas Bock <nicolasbock@gmail.com>
+Date: Mon, 14 Oct 2013 07:15:14 -0600
+Subject: [PATCH] Some libraries are only built statically,
+
+preventing a Charm++ installation with only dynamic libraries.
+
+On a typical Linux system only shared libraries are installed, because of the
+usual security and bloat arguments. However, if I build charm with
+--build-shared, and then install only what is in lib_so, the charmc script
+breaks because some Converse libraries are built purely as .o and don't end up
+in lib_so. One example is seed based load balancing, e.g. libldb-rand.o. As
+far as I can tell, this is not too hard to fix. In the main makefile, the
+targets libldb-*.o are renamed to libldb-*.a, and the charmc script now tests
+both .a and .so when linking the seed based load balancing code.
+---
+ src/scripts/Makefile | 136 +++++++++++++++++++++++++--------------------------
+ src/scripts/charmc   |  39 +++++++++------
+ 2 files changed, 92 insertions(+), 83 deletions(-)
+
+diff --git a/src/scripts/Makefile b/src/scripts/Makefile
+index a52b801..d0e5a03 100644
+--- a/src/scripts/Makefile
++++ b/src/scripts/Makefile
+@@ -358,7 +358,7 @@ dirs+sources:
+ # Converse Libraries
+ # 
+ ###############################################################################
+-CLBLIBS=$(L)/libldb-rand.o $(L)/libldb-spray.o   $(L)/libldb-workstealing.o  $(L)/libldb-neighbor.o $(L)/libldb-none.o $(L)/libldb-test.o $(L)/libldb-bluegene.o
++CLBLIBS=$(L)/libldb-rand.a $(L)/libldb-spray.a   $(L)/libldb-workstealing.a  $(L)/libldb-neighbor.a $(L)/libldb-none.a $(L)/libldb-test.a $(L)/libldb-bluegene.a
+ 
+ TRACELIBS = $(L)/libtrace-converse.a $(L)/libtracef_f.a 
+ 
+@@ -372,32 +372,32 @@ TRACELIBS += $(L)/libtrace-projections.a  $(L)/libtrace-summary.a  \
+              $(L)/libtrace-memory.a $(L)/libtrace-autoPerf.a
+ endif
+ 
+-MEMLIBS=$(L)/libmemory-default.o $(L)/libmemory-os.o $(L)/libmemory-gnu.o \
+-          $(L)/libmemory-gnuold.o $(L)/libmemory-verbose.o 	\
+-	  $(L)/libmemory-paranoid.o \
+-	  $(L)/libmemory-leak.o $(L)/libmemory-isomalloc.o \
+-	  $(L)/libmemory-os-verbose.o $(L)/libmemory-os-isomalloc.o \
+-	  $(L)/libmemory-os-leak.o $(L)/libmemory-os-paranoid.o \
+-          $(L)/libmemory-os-lock.o $(L)/libmemory-os-wrapper.o
++MEMLIBS=$(L)/libmemory-default.a $(L)/libmemory-os.a $(L)/libmemory-gnu.a \
++          $(L)/libmemory-gnuold.a $(L)/libmemory-verbose.a 	\
++	  $(L)/libmemory-paranoid.a \
++	  $(L)/libmemory-leak.a $(L)/libmemory-isomalloc.a \
++	  $(L)/libmemory-os-verbose.a $(L)/libmemory-os-isomalloc.a \
++	  $(L)/libmemory-os-leak.a $(L)/libmemory-os-paranoid.a \
++          $(L)/libmemory-os-lock.a $(L)/libmemory-os-wrapper.a
+ 
+ BUILD_CHARMDEBUG=$(shell CHARMINC=.; if test -f ./conv-config.sh; then . ./conv-config.sh; echo $$CMK_CHARMDEBUG; fi )
+ 
+ ifneq "$(BUILD_CHARMDEBUG)" "0"
+-MEMLIBS += $(L)/libmemory-charmdebug.o $(L)/libmemory-charmdebug-mmap.o \
+-	  $(L)/libmemory-charmdebug-slot.o  \
+-          $(L)/libmemory-charmdebug-mmap-slot.o \
+-	  $(L)/libmemory-os-charmdebug.o $(L)/libmemory-hooks-charmdebug.o
++MEMLIBS += $(L)/libmemory-charmdebug.a $(L)/libmemory-charmdebug-mmap.a \
++	  $(L)/libmemory-charmdebug-slot.a  \
++          $(L)/libmemory-charmdebug-mmap-slot.a \
++	  $(L)/libmemory-os-charmdebug.a $(L)/libmemory-hooks-charmdebug.a
+ endif
+ 
+-THREADLIBS=$(L)/libthreads-default.o $(L)/libthreads-default-tls.o  \
+-          $(L)/libthreads-qt.o 	$(L)/libthreads-qt-tls.o  \
+-	  $(L)/libthreads-context.o $(L)/libthreads-context-tls.o  \
+-	  $(L)/libthreads-uJcontext.o  $(L)/libthreads-uJcontext-tls.o \
+-	  $(L)/libthreads-pthreads.o $(L)/libthreads-fibers.o \
+-	  $(L)/libthreads-stackcopy.o $(L)/libthreads-memoryalias.o \
+-          $(L)/libthreads-qt-memoryalias.o	\
+-	  $(L)/libthreads-context-memoryalias.o	\
+-	  $(L)/libthreads-uJcontext-memoryalias.o
++THREADLIBS=$(L)/libthreads-default.a $(L)/libthreads-default-tls.a  \
++          $(L)/libthreads-qt.a 	$(L)/libthreads-qt-tls.a  \
++	  $(L)/libthreads-context.a $(L)/libthreads-context-tls.a  \
++	  $(L)/libthreads-uJcontext.a  $(L)/libthreads-uJcontext-tls.a \
++	  $(L)/libthreads-pthreads.a $(L)/libthreads-fibers.a \
++	  $(L)/libthreads-stackcopy.a $(L)/libthreads-memoryalias.a \
++          $(L)/libthreads-qt-memoryalias.a	\
++	  $(L)/libthreads-context-memoryalias.a	\
++	  $(L)/libthreads-uJcontext-memoryalias.a
+ 
+ CVLIBS=$(L)/libconv-core.a \
+ 	$(L)/libconv-cplus-y.a $(L)/libconv-cplus-n.a \
+@@ -494,19 +494,19 @@ pup_f.o: pup_f.f90 $(CVHEADERS)
+ 	-$(CHARMC) -c pup_f.f90 && $(CHARMC) -cpmod ../include pupmod.M || touch pup_f.o
+ 
+ ## Converse load balancers (seed balancers, -balance)
+-$(L)/libldb-none.o: cldb.none.c $(CVHEADERS)
++$(L)/libldb-none.a: cldb.none.c $(CVHEADERS)
+ 	$(CHARMC) -o $@ cldb.none.c
+ 
+-$(L)/libldb-rand.o: cldb.rand.c cldb.h $(CVHEADERS)
++$(L)/libldb-rand.a: cldb.rand.c cldb.h $(CVHEADERS)
+ 	$(CHARMC) -o $@ cldb.rand.c
+ 
+-$(L)/libldb-neighbor.o: cldb.neighbor.c cldb.neighbor.h graph.h $(CVHEADERS)
++$(L)/libldb-neighbor.a: cldb.neighbor.c cldb.neighbor.h graph.h $(CVHEADERS)
+ 	$(CHARMC) -o $@ cldb.neighbor.c
+ 
+-$(L)/libldb-workstealing.o: cldb.workstealing.c cldb.workstealing.h graph.h $(CVHEADERS)
++$(L)/libldb-workstealing.a: cldb.workstealing.c cldb.workstealing.h graph.h $(CVHEADERS)
+ 	$(CHARMC) -o $@ cldb.workstealing.c
+ 
+-$(L)/libldb-spray.o: cldb.spray.c $(CVHEADERS)
++$(L)/libldb-spray.a: cldb.spray.c $(CVHEADERS)
+ 	$(CHARMC) -o $@ cldb.spray.c
+ 
+ 
+@@ -516,138 +516,138 @@ $(L)/libldb-spray.o: cldb.spray.c $(CVHEADERS)
+ #//$(L)/libldb-prioritycentralizedopt.o: cldb.prioritycentralizedopt.c cldb.prioritycentralizedopt.h  $(CVHEADERS)
+ #//	$(CHARMC) -o $@ cldb.prioritycentralizedopt.c 
+ 
+-$(L)/libldb-test.o: cldb.test.c $(CVHEADERS)
++$(L)/libldb-test.a: cldb.test.c $(CVHEADERS)
+ 	$(CHARMC) -o $@ cldb.test.c
+ 
+-$(L)/libldb-bluegene.o: cldb.bluegene.c $(CVHEADERS)
++$(L)/libldb-bluegene.a: cldb.bluegene.c $(CVHEADERS)
+ 	$(CHARMC) -o $@ cldb.bluegene.c
+ 
+ ## Memory allocation libraries (-memory)
+ MEM_DEPS=memory.c memory-gnu.c memory-gnuold.c converse.h conv-mach.h $(CVHEADERS)
+-$(L)/libmemory-default.o: $(MEM_DEPS)
++$(L)/libmemory-default.a: $(MEM_DEPS)
+ 	$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_DEFAULT memory.c
+ 
+-$(L)/libmemory-os.o: $(MEM_DEPS)
++$(L)/libmemory-os.a: $(MEM_DEPS)
+ 	$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_OS memory.c
+ 
+-$(L)/libmemory-os-verbose.o: memory-verbose.c $(MEM_DEPS)
++$(L)/libmemory-os-verbose.a: memory-verbose.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_VERBOSE memory.c || touch $@
+ 
+-$(L)/libmemory-os-paranoid.o: memory-paranoid.c $(MEM_DEPS)
++$(L)/libmemory-os-paranoid.a: memory-paranoid.c $(MEM_DEPS)
+ 	-$(CHARMC) -o $@ -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_PARANOID memory.c || touch $@
+ 
+-$(L)/libmemory-os-leak.o: $(MEM_DEPS)
++$(L)/libmemory-os-leak.a: $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LEAK memory.c || touch $@
+ 
+-$(L)/libmemory-os-isomalloc.o: memory-isomalloc.c $(MEM_DEPS)
++$(L)/libmemory-os-isomalloc.a: memory-isomalloc.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_ISOMALLOC memory.c || touch $@
+ 
+-$(L)/libmemory-os-lock.o: memory-lock.c $(MEM_DEPS)
++$(L)/libmemory-os-lock.a: memory-lock.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_LOCK memory.c || touch $@
+ 
+-$(L)/libmemory-os-charmdebug.o: memory-charmdebug.c $(MEM_DEPS)
++$(L)/libmemory-os-charmdebug.a: memory-charmdebug.c $(MEM_DEPS)
+ 	-$(CHARMC) -o $@ -DCMK_MEMORY_BUILD_OS_WRAPPED -DCMK_MEMORY_BUILD_CHARMDEBUG memory.c || touch $@
+ 
+-$(L)/libmemory-os-wrapper.o: memory-os-wrapper.C $(MEM_DEPS)
++$(L)/libmemory-os-wrapper.a: memory-os-wrapper.C $(MEM_DEPS)
+ 	-$(CHARMC) -o $@ memory-os-wrapper.C || touch $@
+ 
+-$(L)/libmemory-hooks-charmdebug.o: memory-charmdebug.c $(MEM_DEPS)
++$(L)/libmemory-hooks-charmdebug.a: memory-charmdebug.c $(MEM_DEPS)
+ 	-$(CHARMC) -o $@ -DCMK_MEMORY_BUILD_GNU_HOOKS -DCMK_MEMORY_BUILD_CHARMDEBUG memory.c || touch $@
+ 
+ # If the system doesn't have sbrk, these compilations may fail.
+ #  This is OK, but then we can't use "-memory gnu" or friends.
+-$(L)/libmemory-gnu.o: $(MEM_DEPS)
++$(L)/libmemory-gnu.a: $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_GNU memory.c || touch $@
+ 
+-$(L)/libmemory-gnuold.o: $(MEM_DEPS)
++$(L)/libmemory-gnuold.a: $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_GNUOLD memory.c || touch $@
+ 
+-$(L)/libmemory-verbose.o: memory-verbose.c $(MEM_DEPS)
++$(L)/libmemory-verbose.a: memory-verbose.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_VERBOSE memory.c || touch $@
+ 
+-$(L)/libmemory-paranoid.o: memory-paranoid.c $(MEM_DEPS)
++$(L)/libmemory-paranoid.a: memory-paranoid.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_PARANOID memory.c || touch $@
+ 
+-$(L)/libmemory-leak.o: memory-leak.c $(MEM_DEPS)
++$(L)/libmemory-leak.a: memory-leak.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_LEAK memory.c || touch $@
+ 
+-$(L)/libmemory-cache.o: memory-cache.c $(MEM_DEPS)
++$(L)/libmemory-cache.a: memory-cache.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_CACHE memory.c || touch $@
+ 
+-$(L)/libmemory-isomalloc.o: memory-isomalloc.c $(MEM_DEPS)
++$(L)/libmemory-isomalloc.a: memory-isomalloc.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -o $@ -DCMK_MEMORY_BUILD_ISOMALLOC memory.c || touch $@
+ 
+-$(L)/libmemory-charmdebug.o: memory-charmdebug.c $(MEM_DEPS)
++$(L)/libmemory-charmdebug.a: memory-charmdebug.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -optimize -o $@ -DCMK_MEMORY_BUILD_CHARMDEBUG memory.c || touch $@
+ 
+-$(L)/libmemory-charmdebug-slot.o: memory-charmdebug.c $(MEM_DEPS)
++$(L)/libmemory-charmdebug-slot.a: memory-charmdebug.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -optimize -o $@ -DCMK_MEMORY_BUILD_CHARMDEBUG -DCMK_SEPARATE_SLOT memory.c || touch $@
+ 
+-$(L)/libmemory-charmdebug-mmap.o: memory-charmdebug.c $(MEM_DEPS)
++$(L)/libmemory-charmdebug-mmap.a: memory-charmdebug.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -optimize -o $@ -DCMK_MEMORY_BUILD_CHARMDEBUG -DCPD_USE_MMAP memory.c || touch $@
+ 
+-$(L)/libmemory-charmdebug-mmap-slot.o: memory-charmdebug.c $(MEM_DEPS)
++$(L)/libmemory-charmdebug-mmap-slot.a: memory-charmdebug.c $(MEM_DEPS)
+ 	-$(CHARMC) -I. -optimize -o $@ -DCMK_MEMORY_BUILD_CHARMDEBUG -DCPD_USE_MMAP -DCMK_SEPARATE_SLOT memory.c || touch $@
+ 
+ ## Thread libraries (-thread)
+ 
+ LIBTHREADSDEPS = threads.c $(CVHEADERS) QUICK_THREADS
+ 
+-$(L)/libthreads-default.o: $(LIBTHREADSDEPS)
++$(L)/libthreads-default.a: $(LIBTHREADSDEPS)
+ 	$(CHARMC) -o $@ -DCMK_THREADS_BUILD_DEFAULT=1 -IQuickThreads -I. threads.c
+ 
+-$(L)/libthreads-default-tls.o: $(LIBTHREADSDEPS)
++$(L)/libthreads-default-tls.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_BUILD_DEFAULT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads -I. threads.c 2> /dev/null || touch $@
+ 
+-$(L)/libthreads-qt.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-qt.a: $(LIBTHREADSDEPS)
+ 	$(CHARMC) -o $@ -DCMK_THREADS_BUILD_QT=1 -IQuickThreads threads.c
+ 
+-$(L)/libthreads-qt-tls.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-qt-tls.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_BUILD_QT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads threads.c 2> /dev/null || touch $@
+ 
+-$(L)/libthreads-context.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-context.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_BUILD_CONTEXT=1 -IQuickThreads threads.c || touch $@
+ 
+-$(L)/libthreads-context-tls.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-context-tls.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_BUILD_CONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads threads.c 2> /dev/null || touch $@
+ 
+-$(L)/libthreads-uJcontext.o: $(LIBTHREADSDEPS) uJcontext.c
++$(L)/libthreads-uJcontext.a: $(LIBTHREADSDEPS) uJcontext.c
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_BUILD_JCONTEXT=1 -IQuickThreads -I. threads.c || touch $@
+ 
+-$(L)/libthreads-uJcontext-tls.o: $(LIBTHREADSDEPS) uJcontext.c
++$(L)/libthreads-uJcontext-tls.a: $(LIBTHREADSDEPS) uJcontext.c
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_BUILD_JCONTEXT=1 -DCMK_THREADS_BUILD_TLS=1 -IQuickThreads -I. threads.c || touch $@
+ 
+-$(L)/libthreads-pthreads.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-pthreads.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_BUILD_PTHREADS=1 -IQuickThreads threads.c || touch $@
+ 
+-$(L)/libthreads-fibers.o: $(LIBTHREADSDEPS)
++$(L)/libthreads-fibers.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_BUILD_FIBERS=1 -IQuickThreads threads.c 2> /dev/null || touch $@
+ 
+-$(L)/libthreads-stackcopy.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-stackcopy.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_BUILD_STACKCOPY=1 -IQuickThreads threads.c || touch $@
+ 
+-$(L)/libthreads-memoryalias.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-memoryalias.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_DEFAULT=1 -IQuickThreads threads.c || touch $@
+ 
+-$(L)/libthreads-qt-memoryalias.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-qt-memoryalias.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_QT=1 -IQuickThreads threads.c || touch $@
+ 
+-$(L)/libthreads-context-memoryalias.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-context-memoryalias.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_CONTEXT=1 -IQuickThreads threads.c || touch $@
+ 
+-$(L)/libthreads-uJcontext-memoryalias.o: $(LIBTHREADSDEPS) 
++$(L)/libthreads-uJcontext-memoryalias.a: $(LIBTHREADSDEPS)
+ 	-$(CHARMC) -o $@ -DCMK_THREADS_ALIAS_STACK=1 -DCMK_THREADS_BUILD_JCONTEXT=1 -IQuickThreads -I. threads.c || touch $@
+ 
+ ## Global swapping (-swapglobal)
+-swapglobal-target: $(L)/libglobal-swap.o $(L)/libglobal-copy.o $(L)/loadsym.o
++swapglobal-target: $(L)/libglobal-swap.a $(L)/libglobal-copy.a $(L)/loadsym.a
+ 
+-$(L)/libglobal-swap.o: global-elfgot.C $(CVHEADERS)
++$(L)/libglobal-swap.a: global-elfgot.C $(CVHEADERS)
+ 	-$(CHARMC) -c global-elfgot.C -o $@ || touch $@
+ 
+-$(L)/libglobal-copy.o: global-elfcopy.C  $(CVHEADERS)
++$(L)/libglobal-copy.a: global-elfcopy.C  $(CVHEADERS)
+ 	-$(CHARMC) -c global-elfcopy.C -o $@ || touch $@
+ 
+-$(L)/loadsym.o: loadsym.c  $(CVHEADERS)
++$(L)/loadsym.a: loadsym.c  $(CVHEADERS)
+ 	-$(CHARMC) -c loadsym.c -o $@ || touch $@
+ 
+ ###############################################################################
+diff --git a/src/scripts/charmc b/src/scripts/charmc
+index 0502c27..a984b18 100755
+--- a/src/scripts/charmc
++++ b/src/scripts/charmc
+@@ -346,6 +346,14 @@ printVersion()
+ 	echo Charm++ Version $version
+ }
+ 
++getLibraryObject()
++{
++  if [[ -f "${CHARMLIB}/$1-$2.a" ]]; then
++    echo "${CHARMLIB}/$1-$2.a"
++  else
++    echo "${CHARMLIBSO}/$1-$2.so"
++  fi
++}
+ 
+ ##############################################################################
+ #
+@@ -1697,13 +1705,12 @@ then
+ fi
+ 
+ BAL_EXT=`getExtention $BALANCE`
+-if [ -z "$BAL_EXT" ]
+-then
+-# Balance has no extention-- is a library reference
+-    BAL_OBJ="$CHARMLIB/libldb-$BALANCE.o"
++if [[ -z "$BAL_EXT" ]]; then
++  # Balance has no extension-- is a library reference
++  BAL_OBJ=$(getLibraryObject "libldb" ${BALANCE})
+ else
+-# Balance has some extention-- must be a .o or .a file
+-    BAL_OBJ="$BALANCE"
++  # Balance has some extension-- must be a .o or .a file
++  BAL_OBJ="$BALANCE"
+ fi
+ 
+ Debug "Finished with BAL_OBJ=$BAL_OBJ, TRACEMODE=$TRACEMODE..."
+@@ -1719,10 +1726,11 @@ then
+ 	fi
+ fi
+ 
++Debug "Finished with BAL_OBJ=$BAL_OBJ, TRACEMODE=$TRACEMODE..."
+ 
+ # Check for valid choice of MEMORY
+ 
+-MEM_OBJ="$CHARMLIB/libmemory-$MEMORY.o"
++MEM_OBJ=$(getLibraryObject "libmemory" ${MEMORY})
+ 
+ if [ ! -r $MEM_OBJ -o ! -s $MEM_OBJ ] 
+ then
+@@ -1733,7 +1741,7 @@ fi
+ # For memory wrapping around the OS allocator, need to add also the wrapper object
+ case $MEMORY in
+   os-*)
+-  MEM_OBJ=$MEM_OBJ" $CHARMLIB/libmemory-os-wrapper.o"
++    MEM_OBJ="${MEM_OBJ} $(getLibraryObject 'libmemory' 'os-wrapper')"
+   ;;
+ esac
+ 
+@@ -1751,7 +1759,8 @@ then
+     THREAD=${THREAD}-tls
+   fi
+ fi
+-THREAD_OBJ="$CHARMLIB/libthreads-$THREAD.o"
++
++THREAD_OBJ=$(getLibraryObject "libthreads" ${THREAD})
+ 
+ if [ ! -r $THREAD_OBJ -o ! -s $THREAD_OBJ ] 
+ then
+@@ -1931,7 +1940,7 @@ esac
+ 
+ if [ "$BUILD_SHARE" = "0" ]
+ then
+-	MIDDLE_LIBS="$MEM_OBJ $THREAD_OBJ $MIDDLE_LIBS"
++	MIDDLE_LIBS="$MIDDLE_LIBS $MEM_OBJ $THREAD_OBJ"
+ fi
+ 
+ if [ "$CHARM_SHARED" = "1" ]
+@@ -1943,23 +1952,23 @@ then
+   then
+     LANG_LIBS="-L$CHARMLIBSO $OBJECTFILES $PRE_LIBRARIES"
+   else
+-    LANG_LIBS="-L$CHARMLIBSO $BAL_OBJ $OBJECTFILES $modInitObj $PRE_LIBRARIES"
++    LANG_LIBS="-L$CHARMLIBSO $OBJECTFILES $modInitObj $PRE_LIBRARIES"
+   fi
+ else
+ # if interoperate, need a lib with moduleinit
+   if [ "$MPI_INTEROPERATE" != "" ]
+   then
+-    LANG_LIBS="-L$CHARMLIB -I$CHARMINC $CMK_SYSINC $BAL_OBJ $PRE_LIBRARIES"
++    LANG_LIBS="-L$CHARMLIB -I$CHARMINC $CMK_SYSINC $PRE_LIBRARIES"
+   else
+-    LANG_LIBS="-L$CHARMLIB -I$CHARMINC $CMK_SYSINC $BAL_OBJ $OBJECTFILES $modInitObj $PRE_LIBRARIES"
++    LANG_LIBS="-L$CHARMLIB -I$CHARMINC $CMK_SYSINC $OBJECTFILES $modInitObj $PRE_LIBRARIES"
+   fi
+ fi
+ if [ "$TRACE_WITH_TAU" = 1 ]
+ then
+ 	echo "Linking with the TAU libraries: $TAU_LIBS"
+-	ALL_LIBS="$LANG_LIBS $MIDDLE_LIBS $CMK_LIBS $POST_LIBRARIES $CMK_SYSLIBS $TAU_LIBS"
++	ALL_LIBS="$LANG_LIBS $MIDDLE_LIBS $BAL_OBJ $CMK_LIBS $POST_LIBRARIES $CMK_SYSLIBS $TAU_LIBS"
+ else
+-	ALL_LIBS="$LANG_LIBS $MIDDLE_LIBS $CMK_LIBS $POST_LIBRARIES $CMK_SYSLIBS"
++	ALL_LIBS="$LANG_LIBS $MIDDLE_LIBS $BAL_OBJ $CMK_LIBS $POST_LIBRARIES $CMK_SYSLIBS"
+ fi
+ Debugf "All libraries are: $ALL_LIBS"
+ 
+-- 
+1.8.3.2
+