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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-06-23 18:26:08 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-06-23 18:26:08 +0200 |
| commit | 1ee22ba11c2bd964ef4270f4f31733b4b22254a2 (patch) | |
| tree | 03d054c30e20ee1799d79667818a162b1c244453 | |
| parent | sci-biology/blasr: improved ebuild a bit, waiting for bug #586816 now (diff) | |
| download | sci-1ee22ba11c2bd964ef4270f4f31733b4b22254a2.tar.gz sci-1ee22ba11c2bd964ef4270f4f31733b4b22254a2.tar.bz2 sci-1ee22ba11c2bd964ef4270f4f31733b4b22254a2.zip | |
sci-biology/jannovar-bin: drop KEYWORDS as the launchers point to non-existing jar files
Package-Manager: portage-2.2.28
| -rw-r--r-- | sci-biology/jannovar-bin/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/jannovar-bin/jannovar-bin-0.16.ebuild | 19 |
2 files changed, 13 insertions, 7 deletions
diff --git a/sci-biology/jannovar-bin/Manifest b/sci-biology/jannovar-bin/Manifest index 1cf87ba43..795b27062 100644 --- a/sci-biology/jannovar-bin/Manifest +++ b/sci-biology/jannovar-bin/Manifest @@ -1 +1,2 @@ DIST jannovar-cli-0.16.jar 9876562 SHA256 ed2392921fee745d9003af7eabbe5b2ed875e745a6ff10c8d7eff80a4206f2b7 SHA512 f5f639cc037e3b9659d290bf7953b82d5639d85708f3c96116045d4c030d24dca43bde3b2e5be543dd0e87305b1d70f94df5df6138299a49cc8c52a50076aef2 WHIRLPOOL bf3a75fa8d05e9019df4468f58b198b445dd7cca6d761b1073703c19583c2e87145cd18358c90d90b758a6948a198393e896c5ef8237de095ab1e7db6a4ae931 +DIST jped-cli-0.16.jar 9890813 SHA256 2f1e5b60c8f82fdb3a38dd9e876e281bca39942d880819e13dcc113f0957e27b SHA512 ee3b7e024fe376d5bec997f8b01c3ee8eac1bb48be160e66097d925387cc065418d90e8f3ca662866ea48573c5d3c4770e8a70be13c735e1ae62b5efe6cf8454 WHIRLPOOL 441c768d5e459961c71fb08f98e2e8209212420ae8ed70c422b9eba39d59d7040099d68315ca8c8d54660e515b562644eaacabb2994adf1113fb69f337faef7e diff --git a/sci-biology/jannovar-bin/jannovar-bin-0.16.ebuild b/sci-biology/jannovar-bin/jannovar-bin-0.16.ebuild index fc706b8ff..aee7faa36 100644 --- a/sci-biology/jannovar-bin/jannovar-bin-0.16.ebuild +++ b/sci-biology/jannovar-bin/jannovar-bin-0.16.ebuild @@ -9,20 +9,25 @@ inherit java-pkg-2 DESCRIPTION="Exome annotation tool" HOMEPAGE="http://compbio.charite.de https://github.com/charite/jannovar" -SRC_URI="https://github.com/charite/jannovar/releases/download/v0.16/jannovar-cli-0.16.jar" +SRC_URI="https://github.com/charite/jannovar/releases/download/v${PV}/jannovar-cli-${PV}.jar + https://repo1.maven.org/maven2/de/charite/compbio/jped-cli/${PV}/jped-cli-${PV}.jar" LICENSE="BSD-2" SLOT="0" -KEYWORDS="~amd64" +KEYWORDS="" IUSE="" -DEPEND=">=virtual/jdk-1.7" -RDEPEND=">=virtual/jre-1.7" +DEPEND=">=virtual/jdk-1.6" +RDEPEND=">=virtual/jre-1.6" S="${WORKDIR}" +# BUG: the two jar file soverwrite each other somehow during install src_install(){ - cp "${DISTDIR}"/jannovar-cli-0.16.jar jannovar-bin.jar - java-pkg_newjar jannovar-bin.jar - java-pkg_dolauncher jannovar-bin --jar jannovar-bin.jar + cp "${DISTDIR}"/jannovar-cli-"${PV}".jar jannovar-cli-bin.jar + java-pkg_newjar jannovar-cli-bin.jar + java-pkg_dolauncher jannovar-bin --jar jannovar-cli-"${PV}".jar + cp "${DISTDIR}"/jped-cli-"${PV}".jar jped-cli-bin.jar + java-pkg_newjar jped-cli-bin.jar + java-pkg_dolauncher jped-cli-bin --jar jped-cli-"${PV}".jar } |