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authorJustin Lecher <jlec@gentoo.org>2016-06-09 20:33:07 +0100
committerJustin Lecher <jlec@gentoo.org>2016-06-09 20:33:07 +0100
commit27154308655f11df2ff3e17987183bfd1f81b244 (patch)
tree8837d92db2249711316e70324d22066facfc2085
parentsci-chemistry/atompaw version bumped to 4.0.0.13 (diff)
parentastlib in main tree (diff)
downloadsci-27154308655f11df2ff3e17987183bfd1f81b244.tar.gz
sci-27154308655f11df2ff3e17987183bfd1f81b244.tar.bz2
sci-27154308655f11df2ff3e17987183bfd1f81b244.zip
Merge remote-tracking branch 'github/master'
* github/master: astlib in main tree montage and wrapper now in main tree
-rw-r--r--dev-python/astlib/Manifest1
-rw-r--r--dev-python/astlib/astlib-0.7.0.ebuild36
-rw-r--r--dev-python/astlib/metadata.xml21
-rw-r--r--dev-python/montage-wrapper/Manifest1
-rw-r--r--dev-python/montage-wrapper/metadata.xml17
-rw-r--r--dev-python/montage-wrapper/montage-wrapper-0.9.7.ebuild39
-rw-r--r--sci-astronomy/montage/Manifest2
-rw-r--r--sci-astronomy/montage/files/montage-3.3-gcc48.patch97
-rw-r--r--sci-astronomy/montage/metadata.xml12
-rw-r--r--sci-astronomy/montage/montage-3.3.ebuild55
10 files changed, 0 insertions, 281 deletions
diff --git a/dev-python/astlib/Manifest b/dev-python/astlib/Manifest
deleted file mode 100644
index 462098cb2..000000000
--- a/dev-python/astlib/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST astLib-0.7.0.tar.gz 711298 SHA256 c6105a6d86c8fceeb0d0bad217106efcc1f1d12a1fcae2d63c1392f518c18152 SHA512 1984f02b847ef4ce123000f89999a52c6fb1dffa9fb8d1c9ad5c731cb27cab65b4ba735d24f79282f71d64cd8dcff414be1fae9161b04d8be170ed6cb84eb048 WHIRLPOOL 58c40033209cbda7b13e9c4ce83ad31f55b526f224f562d3caa1c237e2a5c763847b452afd995ef2479165eacc64599f6745c188651d013452c304ff6e8b844c
diff --git a/dev-python/astlib/astlib-0.7.0.ebuild b/dev-python/astlib/astlib-0.7.0.ebuild
deleted file mode 100644
index 8640714e5..000000000
--- a/dev-python/astlib/astlib-0.7.0.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_7,3_3} )
-
-inherit distutils-r1
-
-MYPN=astLib
-MYP=${MYPN}-${PV}
-
-DESCRIPTION="Python astronomy modules for image and coordinate manipulation"
-HOMEPAGE="http://astlib.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${MYP}.tar.gz"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-LICENSE="BSD"
-
-IUSE="doc examples"
-
-DEPEND=""
-RDEPEND="${DEPEND}
- dev-python/matplotlib[${PYTHON_USEDEP}]
- sci-libs/scipy[${PYTHON_USEDEP}]
- dev-python/astropy[${PYTHON_USEDEP}]"
-
-S="${WORKDIR}/${MYP}"
-
-python_install_all() {
- use doc && HTML_DOCS=( docs/${MYPN}/. )
- use examples && EXAMPLES=( examples/. )
- distutils-r1_python_install_all
-}
diff --git a/dev-python/astlib/metadata.xml b/dev-python/astlib/metadata.xml
deleted file mode 100644
index acde5aed7..000000000
--- a/dev-python/astlib/metadata.xml
+++ /dev/null
@@ -1,21 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-astronomy@gentoo.org</email>
- <name>Gentoo Astronomy Project</name>
- </maintainer>
- <longdescription lang="en">
- astLib is a set of Python modules that provides some tools for
- research astronomers. It can be used for simple plots, statistics,
- common calculations, coordinate conversions, and manipulating FITS
- images with World Coordinate System (WCS) information through
- PyWCSTools - a simple wrapping of WCSTools by Doug Mink. PyWCSTools
- is distributed (and developed) as part of astLib.
- In Gentoo, PyWCSTools is using the stock library instead of the
- bundled one.
-</longdescription>
- <upstream>
- <remote-id type="sourceforge">astlib</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/dev-python/montage-wrapper/Manifest b/dev-python/montage-wrapper/Manifest
deleted file mode 100644
index f0ebe0492..000000000
--- a/dev-python/montage-wrapper/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST montage-wrapper-0.9.7.tar.gz 35817 SHA256 178859fdbeb9d6c427a0c4b44b957d858c9a596490087b00a35f7d22a10e9ec4 SHA512 6d0200b4192a00b5fac28920c8706cba567e47fa789154342b854bc29f07f971d1fe4351deb7e3693b6de71e40ccbf730fe896f2e8b4dc8d0ef9fb5f3998e51e WHIRLPOOL 3db74307169898efec6e3d4b759ada10aad09f0f955da8dbc3215ac5296a70333222742204fa2a98b1f29601fa13b80a16d9c329d6b918a367d0981fd1c60616
diff --git a/dev-python/montage-wrapper/metadata.xml b/dev-python/montage-wrapper/metadata.xml
deleted file mode 100644
index aa3e481c1..000000000
--- a/dev-python/montage-wrapper/metadata.xml
+++ /dev/null
@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-astronomy@gentoo.org</email>
- <name>Gentoo Astronomy Project</name>
- </maintainer>
- <longdescription>
- This Astropy-affiliated package provides a python wrapper to the
- Montage Astronomical Image Mosaic Engine, including both functions to
- access individual Montage commands, and high-level functions to
- facilitate mosaicking and re-projecting.
-</longdescription>
- <upstream>
- <remote-id type="pypi">montage-wrapper</remote-id>
- </upstream>
-</pkgmetadata>
diff --git a/dev-python/montage-wrapper/montage-wrapper-0.9.7.ebuild b/dev-python/montage-wrapper/montage-wrapper-0.9.7.ebuild
deleted file mode 100644
index 9ac8c65c7..000000000
--- a/dev-python/montage-wrapper/montage-wrapper-0.9.7.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python{2_7,3_3} )
-
-inherit distutils-r1
-
-DESCRIPTION="Python wrapper for the Montage mosaicking toolkit"
-HOMEPAGE="http://www.astropy.org/montage-wrapper/"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc test"
-
-RDEPEND="
- dev-python/astropy[${PYTHON_USEDEP}]
- sci-astronomy/montage"
-DEPEND="
- dev-python/astropy[${PYTHON_USEDEP}]
- dev-python/setuptools[${PYTHON_USEDEP}]
- test? ( sci-astronomy/montage )"
-
-python_compile_all() {
- use doc && PYTHONPATH=".." emake -C docs html
-}
-
-python_test() {
- ${EPYTHON} setup.py test
-}
-
-python_install_all() {
- use doc && HTML_DOCS=( docs/_build/html/. )
- distutils-r1_python_install_all
-}
diff --git a/sci-astronomy/montage/Manifest b/sci-astronomy/montage/Manifest
deleted file mode 100644
index 97d0cb64b..000000000
--- a/sci-astronomy/montage/Manifest
+++ /dev/null
@@ -1,2 +0,0 @@
-DIST Montage_v3.3.tar.gz 6967237 SHA256 a4776d3f050ac9aed966de47986ee44f613f04b29fca55f72062754cfc258067 SHA512 3a1e5a63095d5ea5a27878712b79f370e92d9495e8eac1e43ddc4262194de7c4deb5c8fef1f14c3f579aa3343ba9ff3be0b3f3364f86b464057ed34973e734a8 WHIRLPOOL a7f52d325ad633c4a616355dbad1a90ed2b34f6d83399077d08aa2b430055bfb04e8010c58d93ec4fda1cc863717774bbc2e768cbad7f8daa07eaecd7667d3fb
-DIST montage-docs.tar.gz 91461226 SHA256 0037b49551001d4cc75ac7c084d65ff0ecb84026934853a9051b02976ef676b9 SHA512 5df4bf5e06486b43eb0ab3bd1cb9f8b99b3be375e319cb4ff95e850d4c89fc48abe3840832cabac54e378f12833ab3c5924610771a5dd22e5a2a19a3a5f32f38 WHIRLPOOL b18f2753316060693c2d0a93ed9e86f91fff8c6ceeb60ec5e6dd597b974e0f926418013c5c9dbe8e291d574ff26b52fdf1a0d1ff54bbe25f04fca3f4b8d4b0e1
diff --git a/sci-astronomy/montage/files/montage-3.3-gcc48.patch b/sci-astronomy/montage/files/montage-3.3-gcc48.patch
deleted file mode 100644
index 4846b4c95..000000000
--- a/sci-astronomy/montage/files/montage-3.3-gcc48.patch
+++ /dev/null
@@ -1,97 +0,0 @@
-diff -Nur Montage_v3.3.orig/grid/Pegasus/mPresentation.c Montage_v3.3/grid/Pegasus/mPresentation.c
---- Montage_v3.3.orig/grid/Pegasus/mPresentation.c 2009-12-10 19:54:51.000000000 -0800
-+++ Montage_v3.3/grid/Pegasus/mPresentation.c 2014-04-17 14:36:28.735594113 -0700
-@@ -14,6 +14,7 @@
- #include <stdlib.h>
- #include <unistd.h>
- #include <strings.h>
-+#include <string.h>
-
- #define MAXLEN 20000
-
-diff -Nur Montage_v3.3.orig/lib/src/coord/ccalc.c Montage_v3.3/lib/src/coord/ccalc.c
---- Montage_v3.3.orig/lib/src/coord/ccalc.c 2009-12-10 19:54:51.000000000 -0800
-+++ Montage_v3.3/lib/src/coord/ccalc.c 2014-04-17 14:11:51.041349620 -0700
-@@ -25,7 +25,7 @@
- static int ConvertfromDD(char *fmt, char *clongprec, char *clatprec,
- char *clon, char *clat, double *lon, double *lat);
- static char *downcase(char *s);
--char *strdup(const char *s1);
-+
- int ParseUnits(char *cunit, int *chflag, CoordUnit *unit);
- int ParsePrec(CoordUnit units, char *cprec, int longflag);
-
-diff -Nur Montage_v3.3.orig/lib/src/two_plane_v1.1/initdistdata.c Montage_v3.3/lib/src/two_plane_v1.1/initdistdata.c
---- Montage_v3.3.orig/lib/src/two_plane_v1.1/initdistdata.c 2009-12-10 19:54:51.000000000 -0800
-+++ Montage_v3.3/lib/src/two_plane_v1.1/initdistdata.c 2014-04-17 14:35:14.559081232 -0700
-@@ -1,8 +1,13 @@
- #include <stdio.h>
-+#include <string.h>
- #include <strings.h>
- #include "fitsio.h"
- #include "distort.h"
-
-+int parse_double(char *fitsheader, double *value, const char *key);
-+int parse_int(char *fitsheader, int *value, const char *key);
-+int parse_str(char *fitsheader, char *value, const char *key);
-+
- fitsfile *ffp_FITS_In;
-
- int openfitsfile(char *fitsfilename)
-@@ -21,16 +26,16 @@
- return 0;
- }
-
--closefitsfile()
-+int closefitsfile()
- {
- int I_fits_return_status=0;
- fits_close_file(ffp_FITS_In, &I_fits_return_status);
- if (I_fits_return_status != 0)
- {
- fprintf(stderr, "Error closing file\n");
-- return;
-+ return -1;
- }
-- return;
-+ return 0;
- }
-
- int initdata_byheader(char *fitsheader, DistCoeff *coeff)
-diff -Nur Montage_v3.3.orig/lib/src/two_plane_v1.1/two_plane.c Montage_v3.3/lib/src/two_plane_v1.1/two_plane.c
---- Montage_v3.3.orig/lib/src/two_plane_v1.1/two_plane.c 2010-02-04 11:53:56.000000000 -0800
-+++ Montage_v3.3/lib/src/two_plane_v1.1/two_plane.c 2014-04-17 14:43:20.094377873 -0700
-@@ -21,6 +21,11 @@
- #include "two_plane.h"
- #include "distort.h"
-
-+int undistort(double u, double v, DistCoeff coeff, double *x, double *y);
-+int distort(double x, double y, DistCoeff coeff, double *u, double *v);
-+int initdata_byheader(char *fitsheader, DistCoeff *coeff);
-+
-+
- int plane1_to_plane2_transform(double x_1, double y_1, double *x_2, double *y_2,
- struct TwoPlane *two_plane){
-
-diff -Nur Montage_v3.3.orig/lib/src/wcstools-3.8.1/libwcs/imhfile.c Montage_v3.3/lib/src/wcstools-3.8.1/libwcs/imhfile.c
---- Montage_v3.3.orig/lib/src/wcstools-3.8.1/libwcs/imhfile.c 2007-01-08 09:24:29.000000000 -0800
-+++ Montage_v3.3/lib/src/wcstools-3.8.1/libwcs/imhfile.c 2014-04-17 14:40:06.993064103 -0700
-@@ -1019,7 +1019,6 @@
- nbw = write (fd, image, nbimage);
- close (fd);
-
-- free (pixname);
- return (nbw);
- }
-
-diff -Nur Montage_v3.3.orig/util/TblExec/mTblExec.c Montage_v3.3/util/TblExec/mTblExec.c
---- Montage_v3.3.orig/util/TblExec/mTblExec.c 2009-12-10 19:54:51.000000000 -0800
-+++ Montage_v3.3/util/TblExec/mTblExec.c 2014-04-17 14:49:34.896939154 -0700
-@@ -4,6 +4,7 @@
- #include <ctype.h>
- #include <sys/types.h>
- #include <time.h>
-+#include <unistd.h>
-
- #include <mtbl.h>
- #include <svc.h>
diff --git a/sci-astronomy/montage/metadata.xml b/sci-astronomy/montage/metadata.xml
deleted file mode 100644
index 5fda38153..000000000
--- a/sci-astronomy/montage/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-<maintainer type="project">
- <email>sci-astronomy@gentoo.org</email>
- <name>Gentoo Astronomy Project</name>
-</maintainer>
-<longdescription lang="en">
- Montage is a toolkit for assembling Flexible Image Transport System
- (FITS) images into custom mosaics
-</longdescription>
-</pkgmetadata>
diff --git a/sci-astronomy/montage/montage-3.3.ebuild b/sci-astronomy/montage/montage-3.3.ebuild
deleted file mode 100644
index 260796d6b..000000000
--- a/sci-astronomy/montage/montage-3.3.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-inherit eutils toolchain-funcs
-
-MYP=Montage_v${PV}
-
-DESCRIPTION="Astronomical image mosaic engine"
-HOMEPAGE="http://montage.ipac.caltech.edu/"
-SRC_URI="http://montage.ipac.caltech.edu/download/${MYP}.tar.gz
- doc? ( http://montage.ipac.caltech.edu/docs/docs.tar.gz -> ${PN}-docs.tar.gz )"
-
-LICENSE="Montage"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-SLOT="0"
-
-IUSE="doc mpi"
-
-# unfortunate upstream patching, cfitsio, wcstools, jpeg
-# see docs/ExternalLibraries
-
-RDEPEND=""
-DEPEND="${RDEPEND}"
-
-S="${WORKDIR}/${MYP}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-gcc48.patch
- use doc && mv "${WORKDIR}"/docs/* docs/
- tc-export CC AR
-
- find . -name Makefile\* | xargs sed -i \
- -e "/^CC.*=/s:\(gcc\|cc\):$(tc-getCC):g" \
- -e "/^CFLAGS.*=/s:-g:${CFLAGS}:g" \
- -e "s:ar q:$(tc-getAR) q:g" || die
-
- if use mpi; then
- sed -i \
- -e 's:# MPICC:MPICC:' \
- -e 's:# BINS:BINS:' \
- Montage/Makefile || die
- fi
-}
-
-src_install () {
- dobin bin/*
- dodoc README ChangeHistory
- if use doc; then
- insinto /usr/share/doc/${PF}
- doins -r docs/*
- fi
-}