refmac version bump to 5.5.108

(Portage version: 2.2_rc46/git/Linux x86_64)
 (Signed Manifest commit)

3 files changed, 87 insertions, 2 deletions

diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog
index 6df674221..3f666a3d9 100644
--- a/sci-chemistry/refmac/ChangeLog
+++ b/sci-chemistry/refmac/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*refmac-5.5.0108 (17 Oct 2009)
+
+  17 Oct 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
+  +refmac-5.5.0108.ebuild:
+  version bump
+
 *refmac-5.5.0107 (14 Oct 2009)
 
   14 Oct 2009; Justin Lecher (jlec) <jlec@j-schmitz.net>
diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest
index d3023243f..cdc3a9520 100644
--- a/sci-chemistry/refmac/Manifest
+++ b/sci-chemistry/refmac/Manifest
@@ -1,3 +1,6 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
 AUX 5.5-allow-dynamic-linking.patch 2025 RMD160 b4324061b5468aedce6d37fc17049711231e677d SHA1 d04e47048302bd7df59d470a9657289871f42721 SHA256 410ffe2a7dee8dd30376355298319f7cc413fa2ff0765a1f77f02cb975e4a23a
 AUX 5.5.0092-allow-dynamic-linking.patch 2025 RMD160 b4324061b5468aedce6d37fc17049711231e677d SHA1 d04e47048302bd7df59d470a9657289871f42721 SHA256 410ffe2a7dee8dd30376355298319f7cc413fa2ff0765a1f77f02cb975e4a23a
 AUX 5.5.0095-allow-dynamic-linking.patch 2025 RMD160 b4324061b5468aedce6d37fc17049711231e677d SHA1 d04e47048302bd7df59d470a9657289871f42721 SHA256 410ffe2a7dee8dd30376355298319f7cc413fa2ff0765a1f77f02cb975e4a23a
@@ -11,11 +14,20 @@ DIST refmac_5.5.0102.tar.gz 1298285 RMD160 0a33e10ad498f9d516aa174ceddf8f860ec17
 DIST refmac_5.5.0105.tar.gz 1326353 RMD160 39928431ed7efdfd300855f43bf6323dc723a12c SHA1 511002586bec3966d8693d7f1c43496c9bdeda1f SHA256 4a65b1dc1ceaf216415612d80b1ba14dec2793bc29e7c2008c03773f1003205f
 DIST refmac_5.5.0106.tar.gz 1326422 RMD160 16207e528aea426efd70f7dca290b45eedda9050 SHA1 64bdc4ff6cb06c207a2382c4873092c9a4db0c8c SHA256 fe5d618a1aecbae8089cc0f0d2e8d6cdbd5e0afc4fca6c9783e393cabe6f63ce
 DIST refmac_5.5.0107.tar.gz 1326419 RMD160 360fe2dd88d31fc1b1afc077a15e469a1d8bdc13 SHA1 ab60eb466a46e7dae033225416e9883b8884c14b SHA256 aa605a689a194d596b0651f5116796d43d6e3967a6c496873bcdc712802a5fe8
-DIST test-framework.tar.gz 130939944 RMD160 ab9dbb0ad1b86dbedf3633742b252c2cc8aa4541 SHA1 2d5f9857fd2cfcd40e79e4ab48f3cd7d2ced1117 SHA256 8b56ade3423bc4c04495241b972d7591a980b32bf09d3c296db5fdd2f5db5229
+DIST refmac_5.5.0108.tar.gz 1326723 RMD160 0c896be0980aa15f4879563c69bad649af340831 SHA1 4de851b1723a62f2d58c312d3c62b4cb7423fa32 SHA256 8480cea31c707263455daf94d8f6ff2c485d0ac642dc86bd8609d9bffe6883c0
+DIST test-framework.tar.gz 130940336 RMD160 46c813a10921b45c4a6865f336eea0b92e4c5431 SHA1 aff53b19244080fd755f6e95b54748e297c3a64c SHA256 59dafd97b6cf34432e58921ba65bb4820cbcd506d7a042984a8c228cf8e63aaa
 EBUILD refmac-5.5.0102.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec
 EBUILD refmac-5.5.0105.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec
 EBUILD refmac-5.5.0106.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec
 EBUILD refmac-5.5.0107.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec
+EBUILD refmac-5.5.0108.ebuild 1584 RMD160 4fac2468c57c9ed9b34baf07a644103939b45c51 SHA1 2293bb927f5b6476317e5a485dbaa2cad60fbb2f SHA256 066766d009f97adb3d447f077ae4577bd5893d2af76c186ab06b4b16f47f41ec
 EBUILD refmac-5.6.0041.ebuild 1563 RMD160 b1d94d52ccb02971b627ed4469e3715e650d1f98 SHA1 7ba175283161f546ad91fc3f3bba717a035324fd SHA256 b1ee045e9c9a1c6aee6ee28e02876e0f1f869e195148eeb936521470228c2267
-MISC ChangeLog 7441 RMD160 0773cd5cbe7fc020f78ea3e8e71a102c8835b637 SHA1 d06e062b398985048cea4832a7ab1b986d8cb1b9 SHA256 f98662f3949cbc1342a45a268d4fd49e1bdbe957d3a24e3ee9344c82bc23e997
+MISC ChangeLog 7573 RMD160 cbc2f723138e3f4a085fc0e88228ffd798520ac1 SHA1 5d878aac60dedc000f5be1b655376c4a5ba35f15 SHA256 34b1d9b230180c4dc3589ea6b475101cd24a7bfba1f73de67426118de8ae3cac
 MISC metadata.xml 314 RMD160 d8922635160b6047732051715291e8553b513bba SHA1 b53fc6fb6cf908093794b876e729606c00351937 SHA256 50a519ddbcef4ad4f76175df36849a076d20adbb6340fdba292175b70c0d9719
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.11 (GNU/Linux)
+
+iEYEARECAAYFAkraS8MACgkQgAnW8HDreRYFmQCeOymdLwTiEu8S+io99ODru5sV
+GagAn2xog3lvn1qPc9pkyj6Z5OSXhWnH
+=baiA
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diff --git a/sci-chemistry/refmac/refmac-5.5.0108.ebuild b/sci-chemistry/refmac/refmac-5.5.0108.ebuild
new file mode 100644
index 000000000..6085d7e34
--- /dev/null
+++ b/sci-chemistry/refmac/refmac-5.5.0108.ebuild
@@ -0,0 +1,67 @@
+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI="2"
+
+inherit fortran base toolchain-funcs versionator
+
+DESCRIPTION="Macromolecular crystallographic refinement program"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/"
+SRC_URI="${HOMEPAGE}data/refmac_stable/refmac_${PV}.tar.gz
+	test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"
+
+SLOT="0"
+LICENSE="ccp4"
+KEYWORDS="~amd64 ~x86"
+IUSE="test"
+RESTRICT="mirror"
+
+RDEPEND="virtual/lapack
+	virtual/blas
+	sci-libs/ccp4-libs
+	sci-libs/mmdb"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+PATCHES=(
+	"${FILESDIR}"/$(get_version_component_range 1-2 ${PV})-allow-dynamic-linking.patch
+	)
+
+src_prepare() {
+	base_src_prepare
+	use test && epatch "${FILESDIR}"/test.log.patch
+}
+
+src_compile() {
+	emake \
+		FC=$(tc-getFC) \
+		CC=$(tc-getCC) \
+		CXX=$(tc-getCXX) \
+		COPTIM="${CFLAGS}" \
+		FOPTIM="${FFLAGS:- -O2}" \
+		VERSION="" \
+		XFFLAGS="-fno-second-underscore" \
+		LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \
+		LLIBLAPACK="-llapack -lblas" \
+		|| die
+}
+
+src_test() {
+	einfo "Starting tests ..."
+	export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
+	export CCP4_TEST="${WORKDIR}"/test-framework
+	export CCP4_SCR="${T}"
+	ln -sf refmac "${S}"/refmac5
+	sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
+	ccp4-run-thorough-tests -v test_refmac5 || die
+}
+
+src_install() {
+	for i in refmac libcheck makecif; do
+		dobin ${i} || die
+	done
+	dosym refmac /usr/bin/refmac5 || die
+	dodoc refmac_keywords.pdf bugs_and_features.pdf || die
+}