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| author |   Justin Lecher <jlec@gentoo.org> | 2015-09-21 21:43:41 +0200 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2015-09-21 21:43:41 +0200 |
| commit | 34064629ffa589001b3c102ba9c4d6d366f85c2b (patch) | |
| tree | a4b7d81a9d00743d5b18ad4c2484f2d32b0dc2a6 | |
| parent | sci-biology/align_to_scf: Bump EAPI to 5 (diff) | |
| download | sci-34064629ffa589001b3c102ba9c4d6d366f85c2b.tar.gz sci-34064629ffa589001b3c102ba9c4d6d366f85c2b.tar.bz2 sci-34064629ffa589001b3c102ba9c4d6d366f85c2b.zip | |
sci-biology/autoeditor: Bump to EAPI 5
Package-Manager: portage-2.2.20.1
Signed-off-by: Justin Lecher <jlec@gentoo.org>
| -rw-r--r-- | sci-biology/autoeditor/autoeditor-1.20.ebuild | 10 | ||||
| -rw-r--r-- | sci-biology/autoeditor/metadata.xml | 2 |
2 files changed, 6 insertions, 6 deletions
diff --git a/sci-biology/autoeditor/autoeditor-1.20.ebuild b/sci-biology/autoeditor/autoeditor-1.20.ebuild index 59868e619..1eda9caac 100644 --- a/sci-biology/autoeditor/autoeditor-1.20.ebuild +++ b/sci-biology/autoeditor/autoeditor-1.20.ebuild @@ -1,8 +1,8 @@ -# Copyright 1999-2014 Gentoo Foundation +# Copyright 1999-2015 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI=3 +EAPI=5 inherit eutils @@ -15,7 +15,7 @@ SRC_URI=" LICENSE="Artistic" SLOT="0" KEYWORDS="~amd64 ~x86" -IUSE="" +IUSE="test" DEPEND=" >=sci-libs/io_lib-1.8.11 @@ -26,7 +26,7 @@ RDEPEND="${DEPEND}" S="${WORKDIR}"/autoEditor-1.20 src_prepare(){ - epatch "${FILESDIR}"/Makefile.patch || die + epatch "${FILESDIR}"/Makefile.patch rm -rf TigrFoundation-2.0 || die "Failed to drop TigrFoundation-2.0/" } @@ -36,6 +36,6 @@ src_prepare(){ # * getConsQV.c:1051: warning: implicit declaration of function 'memset' src_test(){ - make sample > sample.out || die + emake sample > sample.out diff -u -w "${FILESDIR}"/sample_expected.out sample.out || die } diff --git a/sci-biology/autoeditor/metadata.xml b/sci-biology/autoeditor/metadata.xml index 5990f62d7..b0b877b5f 100644 --- a/sci-biology/autoeditor/metadata.xml +++ b/sci-biology/autoeditor/metadata.xml @@ -6,7 +6,7 @@ <email>mmokrejs@fold.natur.cuni.cz</email> <name>Martin Mokrejs</name> </maintainer> - <longdescription>AutoEditor is a program that can automatically correct discrepancies in a + <longdescription>AutoEditor is a program that can automatically correct discrepancies in a multiple alignment by reanalyzing the chromatograms of the discrepant bases. The input to AutoEditor is the multiple alignment in contig form, the sequence and quality values in FASTA format, and the base call positions in |