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| author |   Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-03-31 02:15:01 +0200 |
|---|---|---|
| committer | Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> | 2018-03-31 02:15:01 +0200 |
| commit | 3724acdd4d192ac400d81a94f91e957c0e832ccd (patch) | |
| tree | b00bb363dea5fd770180004346ca6ec97112c879 | |
| parent | sci-biology/bamql: new package (diff) | |
| download | sci-3724acdd4d192ac400d81a94f91e957c0e832ccd.tar.gz sci-3724acdd4d192ac400d81a94f91e957c0e832ccd.tar.bz2 sci-3724acdd4d192ac400d81a94f91e957c0e832ccd.zip | |
sci-biology/BRAKER: version bump, update LICENSE
Package-Manager: Portage-2.3.24, Repoman-2.3.6
| -rw-r--r-- | sci-biology/BRAKER/BRAKER-2.1.0.ebuild (renamed from sci-biology/BRAKER/BRAKER-2.ebuild) | 30 | ||||
| -rw-r--r-- | sci-biology/BRAKER/Manifest | 2 |
2 files changed, 13 insertions, 19 deletions
diff --git a/sci-biology/BRAKER/BRAKER-2.ebuild b/sci-biology/BRAKER/BRAKER-2.1.0.ebuild index b4c752457..13d63d4b8 100644 --- a/sci-biology/BRAKER/BRAKER-2.ebuild +++ b/sci-biology/BRAKER/BRAKER-2.1.0.ebuild @@ -10,15 +10,17 @@ DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" # http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker http://bioinf.uni-greifswald.de/augustus/downloads" -SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER"${PV}".tar.gz -> ${P}.tar.gz" -# Download BRAKER1 from http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz. -# The most recent release is version 1.8, from December 15th 2015. -# Example data for testing the BRAKER1 pipeline is available at -# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1examples.tar.gz (1.1 GB). - -LICENSE="GPL-3" +SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER_v"${PV}".tar.gz -> ${P}.tar.gz" +# Example data for testing the BRAKER2 pipeline is available at +# http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER2examples.tar.gz (1.1 GB). + +# BRAKER2 is using the Artistic-1.0 version without clause 8 about +# commercial distribution +# See discussion at https://opensource.org/licenses/artistic-license-1.0 +# Practically the license is same as http://dev.perl.org/licenses/artistic.html +LICENSE="Artistic" SLOT="0" -KEYWORDS="" +KEYWORDS="~amd64 ~x86" IUSE="" DEPEND="" @@ -26,23 +28,15 @@ RDEPEND="${DEPEND} dev-perl/Scalar-Util-Numeric sci-biology/augustus" #>=sci-biology/GeneMark_ET-bin-4.29" -# -# BUG: -# this causes: -# [blocks B ] <perl-core/Scalar-List-Utils-1.380.0 ("<perl-core/Scalar-List-Utils-1.380.0" is blocking virtual/perl-Scalar-List-Utils-1.380.0) - -S="${WORKDIR}"/BRAKER_v"${PV}".0 -src_prepare(){ - sed -e 's/^use helpMod/use BRAKER::helpMod/' -i braker.pl || die -} +S="${WORKDIR}"/BRAKER_v"${PV}" src_install(){ perl_set_version dobin *.pl insinto ${VENDOR_LIB}/${PN} doins *.pm - dodoc README.braker + dodoc userguide.pdf } pkg_postinst(){ diff --git a/sci-biology/BRAKER/Manifest b/sci-biology/BRAKER/Manifest index e2c4ea415..0f3e0caf5 100644 --- a/sci-biology/BRAKER/Manifest +++ b/sci-biology/BRAKER/Manifest @@ -1 +1 @@ -DIST BRAKER-2.tar.gz 56198 BLAKE2B 7433cfde0c0fd6b7335061d8cfb90e1e17d9a258b60ca0b88f2b222216566e11834129e3db9df85043137975b12343c4b4c2e9e835c3abf43d36af8075488f07 SHA512 67da52604a7269a45128bc2a226a3103d89ff3737aaf0126e231b3af3bc2d94f590927d58b1de03caf8d962f3691270c93be5d60d56f393f8bfd70c196b4bb02 +DIST BRAKER-2.1.0.tar.gz 444207 BLAKE2B a764303ba7b6d95cd4205f90e723f383afbe339a84f2d55e5b098cec5ef80b288caf82517af64ed761032bcfca24393bd112c50826fb0efe90d63eeeb5214a3b SHA512 0f2c9df14a2ce7bf655c14cbdaa943c01adc0aea15cd7c4bd538710f7809f22dabbf34dbddfb028352b13a7fc1cd5237882fb240c2b544aa4584461067ea54d8 |