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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-26 22:19:37 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-26 22:19:37 +0100 |
| commit | 4a01263f019d66b8e42c4caa45f33a4fae99fb2e (patch) | |
| tree | bd1f4c5b26566abfd2dfc2b3a0d54ab0691733a4 | |
| parent | sci-biology/salmon: cmake-utils --> cmake EAPI bump (diff) | |
| download | sci-4a01263f019d66b8e42c4caa45f33a4fae99fb2e.tar.gz sci-4a01263f019d66b8e42c4caa45f33a4fae99fb2e.tar.bz2 sci-4a01263f019d66b8e42c4caa45f33a4fae99fb2e.zip | |
sci-biology/somatic-sniper: remove pack, archived upstream
does not build, needs static libs of samtools
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
| -rw-r--r-- | sci-biology/somatic-sniper/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/somatic-sniper/metadata.xml | 15 | ||||
| -rw-r--r-- | sci-biology/somatic-sniper/somatic-sniper-1.0.4.ebuild | 28 |
3 files changed, 0 insertions, 44 deletions
diff --git a/sci-biology/somatic-sniper/Manifest b/sci-biology/somatic-sniper/Manifest deleted file mode 100644 index 699c88287..000000000 --- a/sci-biology/somatic-sniper/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST somatic-sniper-1.0.4.tar.gz 1985061 BLAKE2B e721656fc6429d66dd2dbd9d27ae9a1f75df7a54d302f6583c664c99950882ab6ad14e5338ab6b39aa879421cc7ba0247e9d3e159d63ed65560c9dfd2ee48748 SHA512 ce6093ba5d853f6ed597cf7c707a52dce7121c7b0b5f6c18ecf3c9850ae41c1df062465390085411669f528c2a85c106a8cb60c0bc39b8d3e3a6ebd644800445 diff --git a/sci-biology/somatic-sniper/metadata.xml b/sci-biology/somatic-sniper/metadata.xml deleted file mode 100644 index ff905cc3e..000000000 --- a/sci-biology/somatic-sniper/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">genome/somatic-sniper</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/somatic-sniper/somatic-sniper-1.0.4.ebuild b/sci-biology/somatic-sniper/somatic-sniper-1.0.4.ebuild deleted file mode 100644 index 51a4b9db8..000000000 --- a/sci-biology/somatic-sniper/somatic-sniper-1.0.4.ebuild +++ /dev/null @@ -1,28 +0,0 @@ -# Copyright 1999-2018 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit cmake-utils - -DESCRIPTION="Compare BAM files from normal and tumor samples and report somatic SNPs" -HOMEPAGE="http://gmt.genome.wustl.edu" -SRC_URI="https://github.com/genome/somatic-sniper/archive/v${PV}.tar.gz -> ${P}.tar.gz" -# git clone https://github.com/genome/somatic-sniper.git - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=" - sys-libs/zlib - sys-libs/ncurses:* - sci-biology/samtools:0.1-legacy" -RDEPEND="${DEPEND}" - -# contains bundled copy of samtools-0.1.6 but links using a static version -# cd /var/tmp/portage/sci-biology/somatic-sniper-1.0.4/work/somatic-sniper-1.0.4_build/build/src/exe/bam-somaticsniper && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam-somaticsniper.dir/link.txt --verbose=1 -# /usr/bin/x86_64-pc-linux-gnu-gcc -Wall -Wl,-O1 -Wl,--as-needed CMakeFiles/bam-somaticsniper.dir/main.c.o -o ../../../../bin/bam-somaticsniper -rdynamic -lpthread -lpthread ../../lib/sniper/libsniper.a -lpthread -lm ../../../../vendor/samtools/libbam.a -lz - -# contains build-common from git tree |