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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2014-03-28 15:30:53 +0100 |
|---|---|---|
| committer |   Nicolas Bock <nicolasbock@gmail.com> | 2014-03-31 09:27:34 -0600 |
| commit | 5455ecb6436bc4876f92dccf91cf100d3ec2cc5b (patch) | |
| tree | 2fc3ae2b39663da38137bc74a4629673e33d509c | |
| parent | sci-biology/tablet: skeleton for a new package eventually to replace current ... (diff) | |
| download | sci-5455ecb6436bc4876f92dccf91cf100d3ec2cc5b.tar.gz sci-5455ecb6436bc4876f92dccf91cf100d3ec2cc5b.tar.bz2 sci-5455ecb6436bc4876f92dccf91cf100d3ec2cc5b.zip | |
sci-biology/RADtools: new package
Package-Manager: portage-2.2.7
| -rw-r--r-- | sci-biology/RADtools/ChangeLog | 10 | ||||
| -rw-r--r-- | sci-biology/RADtools/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/RADtools/RADtools-1.2.4.ebuild | 37 | ||||
| -rw-r--r-- | sci-biology/RADtools/RADtools-9999.ebuild | 37 | ||||
| -rw-r--r-- | sci-biology/RADtools/metadata.xml | 9 |
5 files changed, 95 insertions, 0 deletions
diff --git a/sci-biology/RADtools/ChangeLog b/sci-biology/RADtools/ChangeLog new file mode 100644 index 000000000..0da9d1986 --- /dev/null +++ b/sci-biology/RADtools/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-biology/RADtools +# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 +# $Header: $ + +*RADtools-1.2.4 (28 Mar 2014) +*RADtools-9999 (28 Mar 2014) + + 28 Mar 2014; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + +RADtools-1.2.4.ebuild, +RADtools-9999.ebuild, +metadata.xml: + sci-biology/RADtools: new package diff --git a/sci-biology/RADtools/Manifest b/sci-biology/RADtools/Manifest new file mode 100644 index 000000000..5342bb6b0 --- /dev/null +++ b/sci-biology/RADtools/Manifest @@ -0,0 +1,2 @@ +DIST RADmanual.pdf 90937 SHA256 47d9931f7742eb7a2a42fa78f719176f0da8aadff42260f6ae3a4430664dc9e7 SHA512 4647edd9f14c59484ed04cbcdff3c99b841f169ea41a3ed678c28b6dd5f228cbc88d94f3f75bb5abbba2604cae7aefc2b77960178b4d7868e48c6717f90d08e1 WHIRLPOOL a2aaec0ff5b116cd544bba9e56c029bc5193f320789e098209880dbb967e7bc8c65094f375564679ee8cb0d5689c04000cd2b053349980fd36b3ae39da06b56f +DIST RADtools_1.2.4.tar.gz 125243 SHA256 8162037847a54bbc9f55c110ad0fcd1b1b70bac416a05e90324e4be0299ff7ea SHA512 556323e8debadac6f5607ff639bbd5c73dc0a070a88c1d257fae06215a40cb4b615455a118cb7f5dab7a1a4a9a09d0c0138c02290f3c1e5eba41be11e47b5bbf WHIRLPOOL b75d3a9a2c96921be3972f0d85241cb5058bc6533b6687a4dbf5b0387af064da90c129a4baa2a563dff58089cc5baf5a43a75042adc6fd2d003319a57d254ce2 diff --git a/sci-biology/RADtools/RADtools-1.2.4.ebuild b/sci-biology/RADtools/RADtools-1.2.4.ebuild new file mode 100644 index 000000000..fe4587c0b --- /dev/null +++ b/sci-biology/RADtools/RADtools-1.2.4.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="Tools for processing RAD Sequencing Illumina reads" +HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home" + +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="git://github.com/johnomics/RADtools.git" + KEYWORDS="" +else + SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz + https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf" + KEYWORDS="~amd64" + S="${WORKDIR}" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND=">=dev-lang/perl-5.10 + dev-perl/Parallel-ForkManager" +RDEPEND="${DEPEND}" + +src_install() { + dobin RADMIDs RADmarkers RADpools RADtags + mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README" + perl-module_src_install DESTDIR="${D}" # install RADtools.pm into @INC path +} + diff --git a/sci-biology/RADtools/RADtools-9999.ebuild b/sci-biology/RADtools/RADtools-9999.ebuild new file mode 100644 index 000000000..fe4587c0b --- /dev/null +++ b/sci-biology/RADtools/RADtools-9999.ebuild @@ -0,0 +1,37 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI=5 + +inherit perl-module + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="Tools for processing RAD Sequencing Illumina reads" +HOMEPAGE="https://www.wiki.ed.ac.uk/display/RADSequencing/Home" + +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="git://github.com/johnomics/RADtools.git" + KEYWORDS="" +else + SRC_URI="https://www.wiki.ed.ac.uk/download/attachments/68630442/RADtools_"${PV}".tar.gz + https://www.wiki.ed.ac.uk/download/attachments/68630442/RADmanual.pdf" + KEYWORDS="~amd64" + S="${WORKDIR}" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND=">=dev-lang/perl-5.10 + dev-perl/Parallel-ForkManager" +RDEPEND="${DEPEND}" + +src_install() { + dobin RADMIDs RADmarkers RADpools RADtags + mydoc="CHANGELOG RADmanual.pdf RADmanual.tex README" + perl-module_src_install DESTDIR="${D}" # install RADtools.pm into @INC path +} + diff --git a/sci-biology/RADtools/metadata.xml b/sci-biology/RADtools/metadata.xml new file mode 100644 index 000000000..2bc893037 --- /dev/null +++ b/sci-biology/RADtools/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> + <maintainer> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> +</pkgmetadata> |