diff options
author | Justin Lecher (jlec) <jlec@j-schmitz.net> | 2009-10-02 21:53:47 +0200 |
---|---|---|
committer | Justin Lecher (jlec) <jlec@j-schmitz.net> | 2009-10-05 09:34:00 +0200 |
commit | 594e022ebf772329390f9371cff0247ba35f1eb1 (patch) | |
tree | 164465bfc0d6a1f3b9496254b8eb1cea6e24e4a9 | |
parent | refmac version bump to 5.5.105 (diff) | |
download | sci-594e022ebf772329390f9371cff0247ba35f1eb1.tar.gz sci-594e022ebf772329390f9371cff0247ba35f1eb1.tar.bz2 sci-594e022ebf772329390f9371cff0247ba35f1eb1.zip |
molrep version bump to 10.2.34
-rw-r--r-- | sci-chemistry/molrep/ChangeLog | 6 | ||||
-rw-r--r-- | sci-chemistry/molrep/Manifest | 5 | ||||
-rw-r--r-- | sci-chemistry/molrep/files/10.2.34-respect-FLAGS.patch | 61 | ||||
-rw-r--r-- | sci-chemistry/molrep/molrep-10.2.34.ebuild | 55 |
4 files changed, 126 insertions, 1 deletions
diff --git a/sci-chemistry/molrep/ChangeLog b/sci-chemistry/molrep/ChangeLog index 43913ea38..8f6a39989 100644 --- a/sci-chemistry/molrep/ChangeLog +++ b/sci-chemistry/molrep/ChangeLog @@ -2,6 +2,12 @@ # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ +*molrep-10.2.34 (02 Oct 2009) + + 02 Oct 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> + +files/10.2.34-respect-FLAGS.patch, +molrep-10.2.34.ebuild: + version bump + *molrep-10.2.33 (29 Jul 2009) 29 Jul 2009; Justin Lecher (jlec) <jlec@j-schmitz.net> diff --git a/sci-chemistry/molrep/Manifest b/sci-chemistry/molrep/Manifest index b3f13048b..a57945607 100644 --- a/sci-chemistry/molrep/Manifest +++ b/sci-chemistry/molrep/Manifest @@ -1,11 +1,14 @@ AUX 10.2.27-respect-FLAGS.patch 2376 RMD160 d11071cc402375b2376b6202f960b6f909d1b8df SHA1 7c1ea85188776bbf1054ef18efd55c04343ba187 SHA256 30b55e61663e217c1ee5ef12fe9954046016e303f77f9ff52caa6959c3e3eaa5 AUX 10.2.32-respect-FLAGS.patch 2368 RMD160 4f24b345f0c78de0c0222abfef987d61fe1356d0 SHA1 bc445d646208de7e879a5989b66296fd89b2fc96 SHA256 809d9f290a1eb59b8fc5904328e72c30b65d3be821a61a1bff050bc446bdc991 AUX 10.2.33-respect-FLAGS.patch 2368 RMD160 4f24b345f0c78de0c0222abfef987d61fe1356d0 SHA1 bc445d646208de7e879a5989b66296fd89b2fc96 SHA256 809d9f290a1eb59b8fc5904328e72c30b65d3be821a61a1bff050bc446bdc991 +AUX 10.2.34-respect-FLAGS.patch 2368 RMD160 4f24b345f0c78de0c0222abfef987d61fe1356d0 SHA1 bc445d646208de7e879a5989b66296fd89b2fc96 SHA256 809d9f290a1eb59b8fc5904328e72c30b65d3be821a61a1bff050bc446bdc991 DIST molrep-10.2.27.tar.gz 3595088 RMD160 6e36b6bf992fb306b67de6e483a3487c5fc21da3 SHA1 04d1ecdbd62498703d3c9f3a7d31659074f75c66 SHA256 85c15c827936540134ab65ea9de5a13faa789edeea0f39f65ec1b319ca43c42a DIST molrep-10.2.32.tar.gz 3601054 RMD160 bc71b85de92871d540073b1df48e4df7be843a5a SHA1 514a902306bfdb606a4975f95a31859392ff51f7 SHA256 d6736d11cef2638eb4534d65c31871396d3404c8a3011d55bad81fecd810a8b7 DIST molrep-10.2.33.tar.gz 3601162 RMD160 c75d3512b070c6cff186c8faf93c02a927c0f314 SHA1 1ae001f9fa07c11487ff9c0d9f7f393f119d58a5 SHA256 3df04892a46e21061b9138dd57879741abecddf18bef45c9a98391a8739d589a +DIST molrep-10.2.34.tar.gz 3601494 RMD160 099dbd8a24204957cdf6432f55de392a5951f667 SHA1 ee089279324e3eeb21044a7e61c4850650c659a8 SHA256 44aae53a61b70bb5c780a0a1ffeff25cc5b1e73387b1fbff9ef88646e2fd78e7 EBUILD molrep-10.2.27.ebuild 1160 RMD160 b1f07fbe73c3b00b494fc18e1b9a267e2c575a3d SHA1 4c134783e6212b7d36a90d8f8237b71bc54ee31e SHA256 81e4901a4e5fb86e1af154de28eac6be0c4c142b4d145a9e4c054ac2b342e15b EBUILD molrep-10.2.32.ebuild 1160 RMD160 760335990f17b01524937e009f6841c452cce60b SHA1 fbcb65b2d613ce8e6e2b3e224155ef34c8e938a9 SHA256 d064d9b69c369a810330bad8c1e549649d0c35799082f3f14f2ec93a45389d4a EBUILD molrep-10.2.33.ebuild 1160 RMD160 760335990f17b01524937e009f6841c452cce60b SHA1 fbcb65b2d613ce8e6e2b3e224155ef34c8e938a9 SHA256 d064d9b69c369a810330bad8c1e549649d0c35799082f3f14f2ec93a45389d4a -MISC ChangeLog 906 RMD160 af014fc3f74207f9a300ee38ab04f4460b20e4f9 SHA1 b41c11693f389c22a3f45baf87ce577cceac842a SHA256 100b2461cebffec629cf7e576dfebe3834e09273baf90e3eb2c1a7a1354026a8 +EBUILD molrep-10.2.34.ebuild 1160 RMD160 760335990f17b01524937e009f6841c452cce60b SHA1 fbcb65b2d613ce8e6e2b3e224155ef34c8e938a9 SHA256 d064d9b69c369a810330bad8c1e549649d0c35799082f3f14f2ec93a45389d4a +MISC ChangeLog 1072 RMD160 9fb300247187f1548ad6030710393b8adaa868ba SHA1 f77ff1e63c800af725d1fb3bf45b77e3332baee5 SHA256 59997de176ea3121cf1efdcc4a4824ae7e58f593350837711ac7c64a57517ef3 MISC metadata.xml 215 RMD160 bc9c07aa91f2f175542244e4e4522a73558210a1 SHA1 facb283386de1c0b6b938cdcd4dde04d1694298b SHA256 13f32353652adbd3d934d41381cfc2cacc9e1127c508cebc73806cc1026ee80c diff --git a/sci-chemistry/molrep/files/10.2.34-respect-FLAGS.patch b/sci-chemistry/molrep/files/10.2.34-respect-FLAGS.patch new file mode 100644 index 000000000..d81ec793b --- /dev/null +++ b/sci-chemistry/molrep/files/10.2.34-respect-FLAGS.patch @@ -0,0 +1,61 @@ +--- src/makefile 2009-02-27 16:51:46.492890717 +0100 ++++ src/makefile.new 2009-02-27 16:52:18.295619642 +0100 +@@ -5,8 +5,8 @@ + + BIN = $(MOLREP)/bin + +-OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym.o molrep_unix.o +-OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym.o molrep_unix.o ++OBJS = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_dummy.o molrep_sym_ccp4.o molrep_unix_ccp4.o ++OBJSL = main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym_ccp4.o molrep_unix_ccp4.o + + + all: molrep +@@ -19,31 +19,31 @@ + # ----------------------------- + + molrep.o: molrep.f +- $(MR_FORT) -c molrep.f ++ $(MR_FORT) $(FFLAGS) -c molrep.f + molrep1.o: molrep1.f +- $(MR_FORT) -c molrep1.f ++ $(MR_FORT) $(FFLAGS) -c molrep1.f + molrep2.o: molrep2.f +- $(MR_FORT) -c molrep2.f ++ $(MR_FORT) $(FFLAGS) -c molrep2.f + molrep3.o: molrep3.f +- $(MR_FORT) -c molrep3.f ++ $(MR_FORT) $(FFLAGS) -c molrep3.f + molrep_prog.o: molrep_prog.f +- $(MR_FORT) -c molrep_prog.f ++ $(MR_FORT) $(FFLAGS) -c molrep_prog.f + molrep_prog1.o: molrep_prog1.f +- $(MR_FORT) -c molrep_prog1.f ++ $(MR_FORT) $(FFLAGS) -c molrep_prog1.f + molrep_prog2.o: molrep_prog2.f +- $(MR_FORT) -c molrep_prog2.f ++ $(MR_FORT) $(FFLAGS) -c molrep_prog2.f + molrep_subr.o: molrep_subr.f +- $(MR_FORT) -c molrep_subr.f +-molrep_sym.o: molrep_sym.f +- $(MR_FORT) -c molrep_sym.f ++ $(MR_FORT) $(FFLAGS) -c molrep_subr.f ++molrep_sym_ccp4.o: molrep_sym.f ++ $(MR_FORT) $(FFLAGS) -c molrep_sym_ccp4.f + main_molrep_mtz.o: main_molrep_mtz.f molrep_version.fh molrep_keywords.fh +- $(MR_FORT) -c main_molrep_mtz.f +-molrep_unix.o: molrep_unix.f +- $(MR_FORT) -c molrep_unix.f ++ $(MR_FORT) $(FFLAGS) -c main_molrep_mtz.f ++molrep_unix_ccp4.o: molrep_unix.f ++ $(MR_FORT) $(FFLAGS) -c molrep_unix_ccp4.f + molrep_dummy.o: molrep_dummy.f +- $(MR_FORT) -c molrep_dummy.f ++ $(MR_FORT) $(FFLAGS) -c molrep_dummy.f + + molrep: $(OBJS) +- $(MR_FORT) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) ++ $(MR_FORT) $(FFLAGS) $(LDFLAGS) -o $(BIN)/molrep $(OBJSL) $(MR_LIBRARY) + + # -------------------------------- + diff --git a/sci-chemistry/molrep/molrep-10.2.34.ebuild b/sci-chemistry/molrep/molrep-10.2.34.ebuild new file mode 100644 index 000000000..09be4f2a0 --- /dev/null +++ b/sci-chemistry/molrep/molrep-10.2.34.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: $ + +EAPI="2" + +inherit base multilib toolchain-funcs + +DESCRIPTION="molecular replacement program" +HOMEPAGE="http://www.ysbl.york.ac.uk/~alexei/molrep.html" +SRC_URI="http://dev.gentooexperimental.org/~jlec/science-dist/${P}.tar.gz" + +LICENSE="ccp4" + +SLOT="0" +KEYWORDS="~amd64 ~x86" + +IUSE="" +RDEPEND=">=sci-libs/ccp4-libs-6.1.1 + virtual/lapack" +DEPEND="${RDEPEND}" + +S="${WORKDIR}/${PN}" + +PATCHES=( + "${FILESDIR}"/${PV}-respect-FLAGS.patch + ) + +src_compile() { + cd "${S}"/src + emake \ + MR_FORT=$(tc-getFC) \ + FFLAGS="${FFLAGS}" \ + LDFLAGS="${LDFLAGS}" \ + MR_LIBRARY="-L/usr/$(get_libdir) -lccp4f -lccp4c -lmmdb -lccif -llapack -lstdc++ -lm" \ + || die +} + +src_test() { + ewarn "Can take a long, long time ..." + ewarn "Go, take a coffee, lunch, go to sleep and have breakfast ..." + cd molrep_check && \ + sed 's:\.\.:\.:g' -i em.bat && \ + mkdir out && \ + mkdir scr && \ + MR_TEST="${S}/bin" bash em.bat && \ + MR_TEST="${S}/bin" bash mr.bat || \ + die "test failed" +} + +src_install() { + dobin bin/${PN} || die + + dodoc readme doc/${PN}.rtf || die +} |