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| author |   Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2022-01-25 12:16:16 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@gentoo.org> | 2022-01-25 12:16:16 +0100 |
| commit | 6131f7f5c445d8c658d59ea1ffa26f1a5f541e0e (patch) | |
| tree | 64ff6f231e903a5e92836a165655bde7c798f3be | |
| parent | sci-biology/stacks: bump to version 2.60 (diff) | |
| download | sci-6131f7f5c445d8c658d59ea1ffa26f1a5f541e0e.tar.gz sci-6131f7f5c445d8c658d59ea1ffa26f1a5f541e0e.tar.bz2 sci-6131f7f5c445d8c658d59ea1ffa26f1a5f541e0e.zip | |
sci-biology/sambamba: remove package
We need a D compiler for this, not packaged in ::gentoo
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>
| -rw-r--r-- | sci-biology/sambamba/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/sambamba/metadata.xml | 15 | ||||
| -rw-r--r-- | sci-biology/sambamba/sambamba-0.8.0.ebuild | 36 | ||||
| -rw-r--r-- | sci-biology/sambamba/sambamba-9999.ebuild | 28 |
4 files changed, 0 insertions, 81 deletions
diff --git a/sci-biology/sambamba/Manifest b/sci-biology/sambamba/Manifest deleted file mode 100644 index 0c4fb09d1..000000000 --- a/sci-biology/sambamba/Manifest +++ /dev/null @@ -1,2 +0,0 @@ -DIST lz4-sambamba-0.8.0.tar.gz 320972 BLAKE2B e9af776d3a867f551e20c2a3c234f2c9a27e729b972a0b40e25eee830f1c2a2975fe939de68459fda6d56a1b3a63e26937cfbf77fcbb2b711ecdbc9385069d91 SHA512 f51c5332fdc5a74bcd4f9597b187721cc2f33bc535c374c0ff47f438f79f6bec382e20462bb90d8be5f6bdf02ff5d7b4f5bf358bba55e03211ee566035ef3fbd -DIST sambamba-0.8.0.tar.gz 630637 BLAKE2B ea51a86bb546de3792e6d8bc0494aa2afe525d3914d1cc15ad8d52ca1acd2d109f726154273e98ef0e6144266fc34048f8c5008fe5c50be093b4082fb3fac1b5 SHA512 2d74c5ca3188fe0628b4873891eebecb1f514474bb1a2a8aca4ca3f40275acfb0fda0de5e11097754d317cac39b982b6ae45c5dde457cd83d6f684596ca5a5ac diff --git a/sci-biology/sambamba/metadata.xml b/sci-biology/sambamba/metadata.xml deleted file mode 100644 index 3c6df6245..000000000 --- a/sci-biology/sambamba/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="github">lomereiter/sambamba</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/sambamba/sambamba-0.8.0.ebuild b/sci-biology/sambamba/sambamba-0.8.0.ebuild deleted file mode 100644 index d5f7c1359..000000000 --- a/sci-biology/sambamba/sambamba-0.8.0.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -LZ4_COMMIT="b3692db46d2b23a7c0af2d5e69988c94f126e10a" - -DESCRIPTION="Parallell process SAM/BAM/CRAM files faster than samtools" -HOMEPAGE="https://lomereiter.github.io/sambamba/" -SRC_URI="https://github.com/lomereiter/sambamba/archive/v${PV}.tar.gz -> ${P}.tar.gz - https://github.com/lz4/lz4/archive/${LZ4_COMMIT}.tar.gz -> lz4-${P}.tar.gz" - -LICENSE="GPL-2+" -SLOT="0" -KEYWORDS="" -IUSE="debug" - -# https://github.com/ldc-developers/gentoo-overlay/tree/master/dev-lang/ldc2 -# -# contains bundled htslib -DEPEND="" -RDEPEND="${DEPEND}" - -src_unpack() { - default - rm -r "${S}/lz4" || die - mv "${WORKDIR}/lz4-${LZ4_COMMIT}" "${S}/lz4" || die -} - -src_compile(){ - if use debug ; then - emake debug all - else - emake all - fi -} diff --git a/sci-biology/sambamba/sambamba-9999.ebuild b/sci-biology/sambamba/sambamba-9999.ebuild deleted file mode 100644 index e655b10b0..000000000 --- a/sci-biology/sambamba/sambamba-9999.ebuild +++ /dev/null @@ -1,28 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit git-r3 - -DESCRIPTION="Parallell process SAM/BAM/CRAM files faster than samtools" -HOMEPAGE="https://lomereiter.github.io/sambamba/" -EGIT_REPO_URI="https://github.com/lomereiter/sambamba.git" - -LICENSE="GPL-2+" -SLOT="0" -KEYWORDS="" -IUSE="debug" - -DEPEND="" -RDEPEND="${DEPEND}" - -# https://github.com/ldc-developers/gentoo-overlay/tree/master/dev-lang/ldc2 - -src_compile(){ - if use debug ; then - emake debug all - else - emake all - fi -} |