[sci-biology/tmhmm] QA fixes

(Portage version: 2.1.8.3/git/Linux x86_64)
 (Signed Manifest commit)

4 files changed, 29 insertions, 223 deletions

diff --git a/sci-biology/tmhmm/ChangeLog b/sci-biology/tmhmm/ChangeLog
index 7ccfe16d6..8ab8d4d00 100644
--- a/sci-biology/tmhmm/ChangeLog
+++ b/sci-biology/tmhmm/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/tmhmm
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  27 Jun 2010; Andreas K. Huettel (dilfridge) <mail@akhuettel.de>
+  tmhmm-2.0c.ebuild, -tmhmm:
+  QA fixes
+
   21 Aug 2009; Andrey Kislyuk <weaver@gentoo.org> ChangeLog:
   New package, ebuild written by me
 
diff --git a/sci-biology/tmhmm/Manifest b/sci-biology/tmhmm/Manifest
index 998fbae0d..1821a7095 100644
--- a/sci-biology/tmhmm/Manifest
+++ b/sci-biology/tmhmm/Manifest
@@ -1,4 +1,24 @@
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diff --git a/sci-biology/tmhmm/tmhmm b/sci-biology/tmhmm/tmhmm
deleted file mode 100644
index 529d135d5..000000000
--- a/sci-biology/tmhmm/tmhmm
+++ /dev/null
@@ -1,217 +0,0 @@
-  ACADEMIC SOFTWARE LICENSE AGREEMENT FOR END-USERS AT PUBLICLY FUNDED
-  ACADEMIC, EDUCATION OR RESEARCH INSTITUTIONS FOR THE USE OF TMHMM 2.0c
-  
-  By downloading the Software you are consenting to be bound by and become
-  a party to this agreement as the "Licensee". If you do not agree to all
-  of the terms of this agreement, you must not click the Acceptance
-  button, not install the product nor use the product, and you do not
-  become a LICENSEE under this agreement. 
-  
-  If you are not a member of a publicly funded Academic and/or Education
-  and/or Research Institution you must obtain a commercial license, please
-  send mail to (software@cbs.dtu.dk). This software license agreement is
-  entered into by and between Center for Biological Sequence Analysis,
-  Technical University of Denmark (hereinafter "CBS") and the "LICENSEE". 
-  
-  WHEREAS CBS has the right to license all copyrights and other property
-  rights in the Licensed Software identified as TMHMM 2.0c and developed
-  by CBS and CBS desires to license the Software so that it becomes
-  available for public use and benefit. 
-  
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-  Research Institution. 
-  
-  WHEREAS LICENSEE desires to acquire a free non-exclusive license to use
-  the Software for internal research purposes only. 
-  
-  NOW, THEREFORE, in consideration of the mutual promises and covenants
-  contained herein, the parties agree as follows: 
-  
-  1. Definitions 
-  
-  "Licensed Software" means the specific version TMHMM 2.0c pursuant
-  to this Agreement. Any opinion, findings, conclusions or recommendations
-  expressed in the Licensed Software are those of the authors and do not
-  necessarily reflect the views of CBS. 
-  
-  2. License 
-  
-  Subject to the terms and conditions of this Agreement a non-exclusive,
-  non-transferable License to use and copy the Licensed Software is made
-  available free of charge for the LICENSEE which is a non-profit
-  educational, academic and/or research institution. The License is only
-  granted for personal and internal use in research only at one Site,
-  where a Site is defined as a set of contiguous buildings in one
-  location. The software will be used at only one location of LICENSEE. 
-  
-  This license does not entitle Licensee to receive from CBS copies of the
-  Licensed software on disks, tapes or CD's, hard-copy documentation,
-  technical support, telephone assistance, or enhancements or updates to
-  the Licensed Software. 
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-  may use the Software agree to not give the program to third parties or
-  grant licenses on software, which include the Software, alone or
-  integrated into other software, to third parties. Modification of the
-  source code is prohibited without the prior written consent of CBS. 
-  
-  3. Ownership 
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-  to the Licensed Software, and any upgrades and modifications created by
-  CBS. 
-  
-  4. Consideration 
-  
-  In consideration for the license rights granted by CBS, LICENSEE will
-  obtain this academic license free of charge. 
-  
-  5. Copies 
-  
-  LICENSEE shall have the right to make copies of the Licensed Software
-  for internal use at the Site and for back-up purposes under this
-  Agreement, but agrees that all such copies shall contain the copyright
-  notices and all other reasonable and appropriate proprietary markings or
-  confidential legends that appear on the Licensed Software provided
-  hereunder. 
-  
-  6. Support 
-  
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-  nothing contained herein shall be interpreted as to require CBS to
-  provide maintenance, installation services, version updates, debugging,
-  consultation or end-user support of any kind. 
-  
-  7. Software Protection 
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-  The software code shall be treated as trade secrets and confidential
-  information of CBS, and LICENSEE agrees to use best efforts to hold the
-  same in confidence. LICENSEE's obligation for confidentiality shall not
-  extend to any information which is or becomes generally available to the
-  public, is already known to or subsequently disclosed by third parties
-  to LICENSEE and at its free disposal, or is independently developed by
-  LICENSEE or its affiliates without the use of the confidential
-  information disclosed by CBS, or is required by law or legal process. 
-  
-  Except as other wise expressly permitted in this Agreement, Licensee my
-  not (i) modify or create any derivative works of the Licensed Software
-  or documentation, including customization, translation or localization;
-  (ii) decompile, disassemble, reverse engineer, or otherwise attempt to
-  derive the source code for the Product; (iii) redistribute, encumber,
-  sell, rent, lease, sublicense, or otherwise transfer rights to the
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-  or other proprietary notices, legends, symbols or labels in the Product;
-  or (v) publish any results of benchmark tests run on the Product to a
-  third party without CBS's prior written consent. 
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-  License and to enter into this agreement, (ii) that, to the best of
-  CBS's knowledge, the Licensed software does not infringe any patent,
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-  such representation and warranty shall not apply to any addition to, or
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-  effective as of the date this Agreement is executed by both parties and
-  shall be perpetual unless terminated in accordance with this Section. 
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-  other party's breach of any agreement, covenant, or representation made
-  in this Agreement, such breach remaining uncorrected sixty (60) days
-  after written notice thereof. 
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-  without cause by written notice to CBS specifying the date of
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-  the Licensed Software. 
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-  12. Governing Law 
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-  This Agreement shall be construed in accordance with the laws of
-  Denmark. 
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-  agreement among the parties and supersedes all proposals and prior
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-  duly executed on the date of the download of the software and by
-  accepting the license conditions by pressing the Acceptance button. 
diff --git a/sci-biology/tmhmm/tmhmm-2.0c.ebuild b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
index c26c40b58..57603cf04 100644
--- a/sci-biology/tmhmm/tmhmm-2.0c.ebuild
+++ b/sci-biology/tmhmm/tmhmm-2.0c.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2009 Gentoo Foundation
+# Copyright 1999-2010 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/amos/amos-2.0.8.ebuild,v 1.1 2008/08/26 16:33:07 weaver Exp $
+# $Header: $
 
 EAPI="2"
 
@@ -31,7 +31,6 @@ src_prepare() {
 }
 
 src_install() {
-	cd "${S}"
 	exeinto /opt/${PN}/bin
 	doexe bin/* || die
 	insinto /opt/${PN}/lib