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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 17:00:49 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-06 17:00:49 +0100 |
| commit | 895437263b1776a28bc8cac3b2cc03b08759f028 (patch) | |
| tree | 0cf4051a9a587933dd4c4d40334b2e4ffbfa94f8 | |
| parent | package.mask: mask trowel for removal (diff) | |
| download | sci-895437263b1776a28bc8cac3b2cc03b08759f028.tar.gz sci-895437263b1776a28bc8cac3b2cc03b08759f028.tar.bz2 sci-895437263b1776a28bc8cac3b2cc03b08759f028.zip | |
sci-biology/vcflib: EAPI bump, version bump
still missing dep tabixpp so no keywords yet
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
| -rw-r--r-- | sci-biology/vcflib/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/vcflib/vcflib-1.0.2.ebuild (renamed from sci-biology/vcflib/vcflib-9999.ebuild) | 39 |
2 files changed, 23 insertions, 17 deletions
diff --git a/sci-biology/vcflib/Manifest b/sci-biology/vcflib/Manifest new file mode 100644 index 000000000..57b3d1f2b --- /dev/null +++ b/sci-biology/vcflib/Manifest @@ -0,0 +1 @@ +DIST vcflib-1.0.2-src.tar.gz 20881031 BLAKE2B 67e8fd60db3171fa05cac36306852134cc8c37a3e4715d141547773c3252569a01363298297978d89c015b1120ad0f0d05eb2b67b5ee7d01728f27f0049bc748 SHA512 7dadd2398d4054a1d7e7b520f192243f63c98a4fa184f7c6750dce9296356f4b45bdbb50f7de270a6c4c3aa76deec45980c363e19b22bea64590de711fdb7d71 diff --git a/sci-biology/vcflib/vcflib-9999.ebuild b/sci-biology/vcflib/vcflib-1.0.2.ebuild index 91a14eca3..e8da0c6ab 100644 --- a/sci-biology/vcflib/vcflib-9999.ebuild +++ b/sci-biology/vcflib/vcflib-1.0.2.ebuild @@ -1,13 +1,13 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=6 +EAPI=7 -inherit git-r3 toolchain-funcs +inherit cmake toolchain-funcs DESCRIPTION="VCF/BED utils, Genotype Phenotype Association Toolkit (GPAT++)" HOMEPAGE="https://github.com/vcflib/vcflib" -EGIT_REPO_URI="https://github.com/vcflib/vcflib.git" +SRC_URI="https://github.com/vcflib/vcflib/releases/download/v${PV}/${P}-src.tar.gz" # vcflib is incorporated into several projects, such as freebayes @@ -16,13 +16,18 @@ SLOT="0" KEYWORDS="" IUSE="openmp" -DEPEND="" +DEPEND=" + sys-libs/zlib + sci-libs/htslib +" RDEPEND="${DEPEND}" # contains bundled sci-biology/htslib ? # see also ./include for possible traces of other bundled sw +S="${WORKDIR}/${PN}" + src_prepare(){ - default + cmake_src_prepare sed -e "s/^CXX = g++/CXX = $(tc-getCXX)/" -i Makefile || die sed -e "s/^CXXFLAGS = -O3/CXXFLAGS = ${CXXFLAGS}/" -i Makefile || die # openmp detection stolen from velvet-1.2.10.ebuild @@ -39,15 +44,15 @@ src_prepare(){ } src_compile(){ - if use openmp ; then - emake openmp - else - emake - fi -} - -src_install(){ - dobin bin/* - dolib lib/* # install libvcflib.a - dodoc README.md + mycmakeargs=( + -DOPENMP="$(use_enable openmp)" + -DHTSLIB_LOCAL=NO + ) + cmake_src_compile } +# +# src_install(){ +# dobin bin/* +# dolib lib/* # install libvcflib.a +# dodoc README.md +# } |