sci-biology/jannovar-bin: version bump 0.35, unmask

remove non-bin version, maven is not supported by portage

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>

2 files changed, 12 insertions, 16 deletions

diff --git a/sci-biology/jannovar-bin/Manifest b/sci-biology/jannovar-bin/Manifest
index 784120abf..29a2a696f 100644
--- a/sci-biology/jannovar-bin/Manifest
+++ b/sci-biology/jannovar-bin/Manifest
@@ -1,6 +1,5 @@
-DIST jannovar-cli-0.17.jar 8540135 BLAKE2B 1f286e61ae85e3d097a47043687d042c7a66f2e3a9617bb11a872bedd3388fab2a379381478da9fc1e28824ce9c64070da7db59ccd1a2c833de9d9ce9b37fb79 SHA512 bef201e98176269b2b0069e08aae8c6cdb687d8e0342a53a08b5c00c28d0afbe5c3230dbf57deaea6b0f332d81b7639a5f25a9f25722b756a951d9699fdd9bf9
-DIST jannovar-core-0.17.jar 284035 BLAKE2B 82e334b0e76f20dc8fbd2890206b0839187a52af1c805ebde6a1c229a4e989f8d8fc2ded0b53a8833149608b1f7bd0af9fb6723817170e35a4527dbe133a395f SHA512 78eff3bd16abc3053546b7a14c00b597f17c3b58c2c17e11be033b22b2452c2e3ad0de56cc76387321c00db6cda70219f627022905bdd81354bb45baca5d3c02
-DIST jannovar-hgvs-0.17.jar 198023 BLAKE2B 283719aec622f7bc2f8fca98c1bbe85ccfa986b04e27cde604d147c2e4d71d2aa4e8f407822cdc4b5afb972c4a3d278e144cd50ba2650e80155a8a5f1b47bc61 SHA512 2cd750dccae52bcd6a255feacd26729ff001e7561a3f49eb99f68012f5e0d4948450def8e22e189e3364a509ee7899189a3ba7c94fb9f784d94bea06277a3616
-DIST jannovar-htsjdk-0.17.jar 66149 BLAKE2B 7bd91c8f544d4071556ead47f513cc7abbe09ac3f36935b945ae912301e9af6be8e259510a26e60505d5fa2f2c9ac3bab39f6e7b812e564d81fa183aff8e8e2f SHA512 0605fd7bd53607ba79427a9f7c9e0d30789b6e6d33528bb9d3aa35b876503c8524751c58e38fa3f5d97c2b9b95521d6057eb20ea4fc3c9b378f9df82aa419082
-DIST jannovar-inheritance-checker-0.17.jar 34815 BLAKE2B 367aece2ed477e9f9d47d7e0f1c9930069141f12d05344336b61fcf0bfb4cb80f62c9ecb4f696c1c81676ea5b0e8e0214d1a9e20cf102763ecd23a8a6eef9efe SHA512 777397ff2d0d4d8327eb4a120f3f8fdba6b371c574e6c7c65186c4c7717c6d6a2f41e6246ad3ce741f3022d0a8daaa407dac75988b0c53ea5fa26e2a08c389bf
-DIST jannovar-vardbs-0.17.jar 73655 BLAKE2B d9b7ce562902c688e04252d5e3b4e029f181b338908f2c67347d2e40f7374097c7f92d6e2303c610f82c43c54fd6734126f4a9d591dd17d3b2c66cc2d3bbe087 SHA512 f6d837d9f6fa6ac1b71fe478d76b877fc394fecd95f050704d9d42fddf02b5c059d70351611af6788c4380fd125c46703a4573111671a48b53ff16d31e8ed15d
+DIST jannovar-cli-0.35.jar 15561583 BLAKE2B d1b8f40635beb5b12a33fc1a218878849e18989cd0315e7bfac032bb71920974789f22f361697467b3fa42a3bc6e00003fade3a2940ec08d3b97d9d2b1a6fd8c SHA512 e0615c7982627a57750bc243078002712d92c827fa2b8e264bcc4141768251cde91206e61896f9939aaeee3d8e061ca99ab6d5ed575ec0e28ac377ad6f2c5daf
+DIST jannovar-core-0.35.jar 381491 BLAKE2B 24514d0f6cce77f79724e06bc736a18f1ee94625230a53abc098a728a2003dfdf7a82dc516de8f1c841eda7916a257cf1b91353680f4bafdbf2dbb0576cf7584 SHA512 9da6f681e88fa05837f74d9029dfdcbaf83fc246f395345f982c47098fe9609c8904a5300bb4a9d11b95f026b670f2c6a76f015f5a3774553ccbc6c956d2e662
+DIST jannovar-hgvs-0.35.jar 201027 BLAKE2B 9b91276accfa1d593db181caf6bc51387d133b14e2d4a60cc8b02b3ba26ef8477f962180913586c2a192ab1e869b2d2f6ef4211bd7928884537830fc0b393b62 SHA512 527614f3fc603df76f93895bc7852d6e4adadc4a51f583b0d30c23e4730617d6392fb3d5b7eb684bc4b749d4f77bca2e79c105581ed98f9407b08da4abc40df2
+DIST jannovar-htsjdk-0.35.jar 81035 BLAKE2B f601e0c7c2c8cbcbee4850a39db4131ec512f28d791ebf1e7e43ed96e23560006cf9b98cfa5a2534d0780abff704c4428b5440d3d9076a3612b7206de75c2068 SHA512 342289d848f45d18354862f21e084f391044dd45e7b7398b464d5c309e580c286e34a71db2c3afa62fdb94c36458c1ccaa467e09add0567a4251ce1df2f0c748
+DIST jannovar-vardbs-0.35.jar 198351 BLAKE2B e2e16a2dd1867325c02bfe75fee9c5bf2a34352f19f560057a646015227f412815559637bce8e403fd5aef56d1b841a3eed2ef0d284eab236f5e56a6ca25bf98 SHA512 b393acc88ef580188624c6fa6172c14c648e2c6b9a95b60c6aac24a6324d610e71a5f11f2143cd11b4c717e3ca93cd09958b546991ae8c0bc5f5b4dd61a7b7ff
diff --git a/sci-biology/jannovar-bin/jannovar-bin-0.17.ebuild b/sci-biology/jannovar-bin/jannovar-bin-0.35.ebuild
index 4544eaab8..1b3a90297 100644
--- a/sci-biology/jannovar-bin/jannovar-bin-0.17.ebuild
+++ b/sci-biology/jannovar-bin/jannovar-bin-0.35.ebuild
@@ -1,27 +1,25 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 inherit java-pkg-2
 
 DESCRIPTION="Exome annotation tool (upstream jar binaries)"
-HOMEPAGE="http://compbio.charite.de
-	https://github.com/charite/jannovar"
-SRC_URI="https://search.maven.org/remotecontent?filepath=de/charite/compbio/jannovar-cli/${PV}/jannovar-cli-${PV}.jar
+HOMEPAGE="https://jannovar.readthedocs.io/en/master/"
+SRC_URI="
+	https://search.maven.org/remotecontent?filepath=de/charite/compbio/jannovar-cli/${PV}/jannovar-cli-${PV}.jar
 	https://search.maven.org/remotecontent?filepath=de/charite/compbio/jannovar-vardbs/${PV}/jannovar-vardbs-${PV}.jar
 	https://search.maven.org/remotecontent?filepath=de/charite/compbio/jannovar-htsjdk/${PV}/jannovar-htsjdk-${PV}.jar
-	https://search.maven.org/remotecontent?filepath=de/charite/compbio/jannovar-inheritance-checker/${PV}/jannovar-inheritance-checker-${PV}.jar
 	https://search.maven.org/remotecontent?filepath=de/charite/compbio/jannovar-core/${PV}/jannovar-core-${PV}.jar
 	https://search.maven.org/remotecontent?filepath=de/charite/compbio/jannovar-hgvs/${PV}/jannovar-hgvs-${PV}.jar"
 
 LICENSE="BSD-2"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
-IUSE=""
 
-DEPEND=">=virtual/jdk-1.6"
-RDEPEND=">=virtual/jre-1.6"
+DEPEND=">=virtual/jdk-1.7"
+RDEPEND=">=virtual/jre-1.7"
 
 S="${WORKDIR}"
 
@@ -30,7 +28,6 @@ src_install(){
 	java-pkg_dolauncher jannovar-cli-bin --jar jannovar-cli.jar
 	java-pkg_newjar "${DISTDIR}"/jannovar-vardbs-"${PV}".jar jannovar-vardbs.jar
 	java-pkg_newjar "${DISTDIR}"/jannovar-htsjdk-"${PV}".jar jannovar-htsjdk.jar
-	java-pkg_newjar "${DISTDIR}"/jannovar-inheritance-checker-"${PV}".jar jannovar-inheritance-checker.jar
 	java-pkg_newjar "${DISTDIR}"/jannovar-core-${PV}.jar jannovar-core.jar
 	java-pkg_newjar "${DISTDIR}"/jannovar-hgvs-${PV}.jar jannovar-hgvs.jar
 }