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| author |   Ted Tanberry <ted.tanberry@gmail.com> | 2015-12-03 22:59:00 +0100 |
|---|---|---|
| committer | Ted Tanberry <ted.tanberry@gmail.com> | 2015-12-03 22:59:00 +0100 |
| commit | 94d90ab3b484a298828765dcccac7416741911d2 (patch) | |
| tree | 19d91fd8471d71c78bbdec287e2295d00b05a349 | |
| parent | Merge branch 'master' of https://github.com/gentoo-science/sci (diff) | |
| download | sci-94d90ab3b484a298828765dcccac7416741911d2.tar.gz sci-94d90ab3b484a298828765dcccac7416741911d2.tar.bz2 sci-94d90ab3b484a298828765dcccac7416741911d2.zip | |
sci-biology/pysam: version bump to 0.8.4
Package-Manager: portage-2.2.26
| -rw-r--r-- | sci-biology/pysam/ChangeLog | 5 | ||||
| -rw-r--r-- | sci-biology/pysam/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/pysam/pysam-0.8.4.ebuild | 27 |
3 files changed, 33 insertions, 0 deletions
diff --git a/sci-biology/pysam/ChangeLog b/sci-biology/pysam/ChangeLog index c4c9a546a..492a5fcb1 100644 --- a/sci-biology/pysam/ChangeLog +++ b/sci-biology/pysam/ChangeLog @@ -2,6 +2,11 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Id$ +*pysam-0.8.4 (03 Dec 2015) + + 03 Dec 2015; Ted Tanberry <ted.tanberry@gmail.com> +pysam-0.8.4.ebuild: + sci-biology/pysam: version bump to 0.8.4 + 04 May 2015; Marius Brehler <marbre@linux.sungazer.de> pysam-0.7.5.ebuild: Fix deps diff --git a/sci-biology/pysam/Manifest b/sci-biology/pysam/Manifest index a3ccf1722..a95bf6f41 100644 --- a/sci-biology/pysam/Manifest +++ b/sci-biology/pysam/Manifest @@ -1,3 +1,4 @@ DIST pysam-0.6.tar.gz 841790 SHA256 081c980481f31a81acb06f6fa5638b899321eddfd9eeb5075393e4dad84a1fc8 SHA512 b60df4551600f04e8ae67aec0f2745846d2411e2a1cc4c874ef296ee80ab075256190ebb0ec64eb78231d4d7b59670c5259818cd315f52c923774cc4c0b8b391 WHIRLPOOL eddeb19f3ebf0c6326f7c1b6b7224b2b8cb708e0bf7ceb66b1cac18909abafd1704b264452b70ee6721af4b3b360b51285dcffd7f137c6128920f91dc0dec7b2 DIST pysam-0.7.5.tar.gz 1466667 SHA256 fa85900ead3d1c2c9ce24f28d2b1843c0a8ffb761cd21d440049e29eca2e2453 SHA512 ce609c65eef1188186c28cb8ea1bad73608d738c47089a5ef3a22a14e7bba5acd8f8b6a3fd67935cf1dc9fb57927205ad0f009dc0122b12c1866955ada01198c WHIRLPOOL c9a4488fb8f6fbd2aa74081f5b286befbab980e8544036956e83d82b3f4f9238c6f0138f094b090b30e18b3eb25c36ce4f6cadf65d6e80195091de6d7995f19d +DIST pysam-0.8.4.tar.gz 2878207 SHA256 4acbfe4b15b1db2417094ea64836d416a66e368e6c0e3031b597509f21e8c021 SHA512 1b00fd08d3701988cb2bc01534a739d0cd479894a9b99be934ed476770558707758078714740df39e042c675164fbc7e8ed8e470e05b73682940247f165b29a2 WHIRLPOOL cb53c63cbacfecfad4782f77c5d7def76946595ce2914f657e2383943181df2fbc1b487792c6418d55732e30603e6c59f1cf551dfbfdbd632bac2f514837d995 DIST v0.8.3.tar.gz 2828558 SHA256 ab6c78ec64f4ccf525728a26f676bcc1f37ad021d120fe210ed819dbe6dac992 SHA512 b36fbd0e0c9139f15ea9fdf07a0002219c6e502ca0c113be0de988b9171bf6c6c2e6fe372083949490fdec7eb4bf4d4f7b8114f756dd87ab2b951e3c8dfd8137 WHIRLPOOL b2cbd3a4a506a159cf60aaa7b0f478ce01f8b4c1c52f08dc7def9b72692cfab20b186e03c71fee4f6b7c76c9ad7512e14867d18dd692c4282eabb1e4f307c064 diff --git a/sci-biology/pysam/pysam-0.8.4.ebuild b/sci-biology/pysam/pysam-0.8.4.ebuild new file mode 100644 index 000000000..2b4d3d997 --- /dev/null +++ b/sci-biology/pysam/pysam-0.8.4.ebuild @@ -0,0 +1,27 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI="5" + +PYTHON_COMPAT=( python2_7 ) + +inherit distutils-r1 + +DESCRIPTION="Python interface for the SAM/BAM sequence alignment and mapping format" +HOMEPAGE="https://github.com/pysam-developers/pysam http://pypi.python.org/pypi/pysam" +SRC_URI="https://github.com/pysam-developers/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="dev-python/setuptools[${PYTHON_USEDEP}] + >=sci-biology/samtools-1.2[${PYTHON_USEDEP}] + >=sci-libs/htslib-1.2.1" + +python_compile() { + python_is_python3 || local -x CFLAGS="${CFLAGS} -fno-strict-aliasing" + distutils-r1_python_compile +} |