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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-03-31 23:10:09 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-03-31 23:10:09 +0200 |
| commit | b0176e52f19303e32d2797d6b41273a70dfb2b2c (patch) | |
| tree | 2c873df83be55bdceb4a299bd9158e7feea1ec39 | |
| parent | dev-python/pyBigWig: add python wrapper (diff) | |
| download | sci-b0176e52f19303e32d2797d6b41273a70dfb2b2c.tar.gz sci-b0176e52f19303e32d2797d6b41273a70dfb2b2c.tar.bz2 sci-b0176e52f19303e32d2797d6b41273a70dfb2b2c.zip | |
sci-biology/deeptools: add new package
Package-Manager: Portage-2.3.5, Repoman-2.3.1
| -rw-r--r-- | sci-biology/deeptools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/deeptools/deeptools-2.5.0.ebuild | 32 | ||||
| -rw-r--r-- | sci-biology/deeptools/deeptools-9999.ebuild | 32 | ||||
| -rw-r--r-- | sci-biology/deeptools/metadata.xml | 12 |
4 files changed, 77 insertions, 0 deletions
diff --git a/sci-biology/deeptools/Manifest b/sci-biology/deeptools/Manifest new file mode 100644 index 000000000..c0a50f45e --- /dev/null +++ b/sci-biology/deeptools/Manifest @@ -0,0 +1 @@ +DIST deeptools-2.5.0.tar.gz 59620916 SHA256 2636f96b0781a05149949bebcc3634810c030c7b83187456a275619908bf8787 SHA512 5bd10d4c58cdd7b3318028eb28f6ca9252d42899dee8eb8ad6af1b372ad26fbcc605b712c3369ec45350600f2c822a17679062b9f536f454e5bfb0381715f98f WHIRLPOOL 422bd2a3d9ca2b7f697ae127c487d472c672fcef955b761cb5b5783dbf56ed14c3d05c3f01360fe02aeef01f427ecf45370dc8f0eb1c9e93080ac9938e2cc88e diff --git a/sci-biology/deeptools/deeptools-2.5.0.ebuild b/sci-biology/deeptools/deeptools-2.5.0.ebuild new file mode 100644 index 000000000..e69672942 --- /dev/null +++ b/sci-biology/deeptools/deeptools-2.5.0.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +PYTHON_COMPAT=( python2_7 python3_5 ) + +inherit distutils-r1 + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" +HOMEPAGE="https://github.com/fidelram/deepTools" +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/fidelram/deepTools" + KEYWORDS="" +else + SRC_URI="https://github.com/fidelram/deepTools/archive/2.5.0.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND=">=dev-python/numpy-1.8.0 + >=sci-libs/scipy-0.17.0 + >=dev-python/py2bit-0.1.0 + >=dev-python/pyBigWig-0.2.1 + >=sci-biology/pysam-0.8 + >=dev-python/matplotlib-1.4.0" +RDEPEND="${DEPEND}" diff --git a/sci-biology/deeptools/deeptools-9999.ebuild b/sci-biology/deeptools/deeptools-9999.ebuild new file mode 100644 index 000000000..a2c1fcfb9 --- /dev/null +++ b/sci-biology/deeptools/deeptools-9999.ebuild @@ -0,0 +1,32 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=5 + +PYTHON_COMPAT=( python2_7 python3_5 ) + +inherit distutils-r1 + +[ "$PV" == "9999" ] && inherit git-2 + +DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig" +HOMEPAGE="https://github.com/fidelram/deepTools" +if [ "$PV" == "9999" ]; then + EGIT_REPO_URI="https://github.com/fidelram/deepTools" + KEYWORDS="" +else + SRC_URI="https://github.com/fidelram/deepTools/archive/2.5.0.tar.gz -> ${P}.tar.gz" + KEYWORDS="~amd64" +fi + +LICENSE="GPL-3" +SLOT="0" +IUSE="" + +DEPEND=">=dev-python/numpy-1.8.0 + >=sci-libs/scipy-0.17.0 + >=dev-python/py2bit-0.1.0 + >=dev-python/pyBigWig-0.2.1 + >=sci-biology/pysam-0.8 + >=dev-python/matplotlib-1.4.0" +RDEPEND="${DEPEND}" diff --git a/sci-biology/deeptools/metadata.xml b/sci-biology/deeptools/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/deeptools/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |