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author | Justin Lecher <jlec@gentoo.org> | 2013-06-16 22:18:33 +0200 |
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committer | Justin Lecher <jlec@gentoo.org> | 2013-06-16 22:18:33 +0200 |
commit | c2ac84939cff29d46ec7657f1f55f9c37c31abfc (patch) | |
tree | 5b7537c5370ae2a47e98c76c0577c588f8ff3106 | |
parent | sci-biology/ssaha2-bin: Version Bump; restrict license; add QA_PREBUILT for b... (diff) | |
download | sci-c2ac84939cff29d46ec7657f1f55f9c37c31abfc.tar.gz sci-c2ac84939cff29d46ec7657f1f55f9c37c31abfc.tar.bz2 sci-c2ac84939cff29d46ec7657f1f55f9c37c31abfc.zip |
sci-biology/twinscan: Bump to EAPI=5 and fix license
Package-Manager: portage-2.2.0_alpha180
-rw-r--r-- | sci-biology/twinscan/ChangeLog | 6 | ||||
-rw-r--r-- | sci-biology/twinscan/Manifest | 2 | ||||
-rw-r--r-- | sci-biology/twinscan/metadata.xml | 10 | ||||
-rw-r--r-- | sci-biology/twinscan/twinscan-4.1.2.ebuild | 30 |
4 files changed, 31 insertions, 17 deletions
diff --git a/sci-biology/twinscan/ChangeLog b/sci-biology/twinscan/ChangeLog index 3914a6070..fedf86e90 100644 --- a/sci-biology/twinscan/ChangeLog +++ b/sci-biology/twinscan/ChangeLog @@ -1,7 +1,11 @@ # ChangeLog for sci-biology/twinscan -# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 +# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 16 Jun 2013; Justin Lecher <jlec@gentoo.org> twinscan-4.1.2.ebuild, + metadata.xml: + Bump to EAPI=5 and fix license + 07 Mar 2011; Justin Lecher <jlec@gentoo.org> twinscan-4.1.2.ebuild: Correct Slots for gtk 3 introduction to tree diff --git a/sci-biology/twinscan/Manifest b/sci-biology/twinscan/Manifest index e9fea6590..7e7f3adc1 100644 --- a/sci-biology/twinscan/Manifest +++ b/sci-biology/twinscan/Manifest @@ -1 +1 @@ -DIST iscan-4.1.2.tar_.gz 5894833 SHA256 30c7e980b2ccbba22a5e2d7ff0d7c1aaeb610cc1cec81432bb30e87f03f7e56a +DIST twinscan-4.1.2.tar.gz 5894833 SHA256 30c7e980b2ccbba22a5e2d7ff0d7c1aaeb610cc1cec81432bb30e87f03f7e56a SHA512 d216f790f6d0f35a070575d1aa4b5e1866c00132168b381b9177b076b1b2a16f2ecd7a88aa443d7ba6b8f62c3ec2595ba33c4608a674e09d94e9f7dc6a181327 WHIRLPOOL e95df100f970c6cabf9b21a9a6651dcd249fccbfafc908a8766bf26ad5108c08b5de105c5142492bb7b0c13f39bd65836a92be9161cfbbb303147f925e775d99 diff --git a/sci-biology/twinscan/metadata.xml b/sci-biology/twinscan/metadata.xml index 3302123e5..fc7c76942 100644 --- a/sci-biology/twinscan/metadata.xml +++ b/sci-biology/twinscan/metadata.xml @@ -1,9 +1,9 @@ <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> <pkgmetadata> - <maintainer> - <email>weaver@gentoo.org</email> - <name>Andrey Kislyuk</name> - </maintainer> - <herd>sci-biology</herd> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> </pkgmetadata> diff --git a/sci-biology/twinscan/twinscan-4.1.2.ebuild b/sci-biology/twinscan/twinscan-4.1.2.ebuild index 96b1a049c..516aec88c 100644 --- a/sci-biology/twinscan/twinscan-4.1.2.ebuild +++ b/sci-biology/twinscan/twinscan-4.1.2.ebuild @@ -1,14 +1,16 @@ -# Copyright 1999-2011 Gentoo Foundation +# Copyright 1999-2013 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Header: $ -EAPI=2 +EAPI=5 + +inherit toolchain-funcs DESCRIPTION="TwinScan, N-SCAN, and Pairagon: A gene structure prediction pipeline" HOMEPAGE="http://mblab.wustl.edu/software/twinscan" -SRC_URI="http://mblab.wustl.edu/software/download/iscan-${PV}.tar_.gz" +SRC_URI="http://mblab.wustl.edu/software/download/iscan-${PV}.tar_.gz -> ${P}.tar.gz" -LICENSE="as-is" +LICENSE="all-rights-reserved" SLOT="0" IUSE="" KEYWORDS="~amd64 ~x86" @@ -18,14 +20,21 @@ RDEPEND="${DEPEND}" S="${WORKDIR}/N-SCAN" -src_unpack() { - unpack ${A} - tar -C "${WORKDIR}" -xf iscan-${PV}.tar_ -} - src_prepare() { sed -i "1 a use lib '/usr/share/${PN}/lib/perl5';" "${S}"/bin/*.pl || die - sed -i '/my $blast_param/ s/#//' "${S}/bin/runTwinscan2.pl" + sed -i '/my $blast_param/ s/#//' "${S}/bin/runTwinscan2.pl" || die + tc-export CC AR RANLIB + + sed \ + -e 's:ar :$(AR) :g' \ + -e 's:ranlib :$(RANLIB) :g' \ + -e 's: -o : $(LDFLAGS) -o :g' \ + -i Makefile || die + + sed \ + -e "/^GLIB_CFLAGS/s:=.*:=$($(tc-getPKG_CONFIG) --cflags glib-2.0) -DHAS_GLIB:g" \ + -e "/^GLIB_LFLAGS/s:=.*:=$($(tc-getPKG_CONFIG) --libs glib-2.0)-DHAS_GLIB:g" \ + -i Makefile.include || die } src_install() { @@ -35,5 +44,6 @@ src_install() { doins -r "${S}/lib" || die echo "TWINSCAN=/usr" > "${S}"/99${PN} doenvd "${S}"/99${PN} || die + rm -rf examples/tmp dodoc examples/* README* } |