Update chimera to new version

Package-Manager: portage-2.2.10

3 files changed, 101 insertions, 1 deletions

diff --git a/sci-chemistry/chimera-bin/ChangeLog b/sci-chemistry/chimera-bin/ChangeLog
index 0ff838c0d..6d37a9f6b 100644
--- a/sci-chemistry/chimera-bin/ChangeLog
+++ b/sci-chemistry/chimera-bin/ChangeLog
@@ -2,6 +2,11 @@
 # Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*chimera-bin-1.9 (27 Jun 2014)
+
+  27 Jun 2014; Alexey Shvetsov <alexxy@gentoo.org> +chimera-bin-1.9.ebuild:
+  Update chimera to new version
+
 *chimera-bin-1.8.1 (16 Jan 2014)
 
   16 Jan 2014; Justin Lecher <jlec@gentoo.org> +chimera-bin-1.8.1.ebuild:
@@ -30,4 +35,3 @@
   20 Sep 2012; Justin Lecher <jlec@gentoo.org> +chimera-bin-1.6.2.ebuild,
   +metadata.xml:
   New addition
-
diff --git a/sci-chemistry/chimera-bin/Manifest b/sci-chemistry/chimera-bin/Manifest
index 745826bf9..7c906e7e1 100644
--- a/sci-chemistry/chimera-bin/Manifest
+++ b/sci-chemistry/chimera-bin/Manifest
@@ -4,3 +4,5 @@ DIST chimera-1.8-linux.bin 107641016 SHA256 a42964463271ba95742340e228f438513616
 DIST chimera-1.8-linux_x86_64.bin 109029644 SHA256 3734464f5140e0f24b3da53ed99a6ba3fd6f0fb11769b9a3aeb4f85d6f4a88a0 SHA512 2fc759cb7ba9092843ed675d9bdaeaec0d0958b4e6a951314478c1e1d43bdc048010cd3cf86111dc735eae74f190e8020ddbdcb292624d894d8e2ffcfb0c832e WHIRLPOOL 18a0d74ddef4dbf2ee419c43a371476aa8a3939520e133aaf456f9da5a3bc8b22ca67729667c9f4c76e38a5d3325b90d056e6bd4ca7d867c29ec7e148971f721
 DIST chimera-1.8.1-linux.bin 107610750 SHA256 b72b44df768e88a58ebd19a434c3566c0640e7fd7bb28a5ffd02c35ee9d5cc0c SHA512 ca67cacc11b85039cbeb193dc551e48a2103d9e7f07f6b9d5cb54dfcd9f615bd8ba64af2929dddc58a4f25099fd33b1d2facee43098338464761c08d4acec075 WHIRLPOOL c160cfbc851a774f1d6b370ed9ad89f9d9724a4de95bfd54bbc49599b8d0f5208eb5af24f21760d7647009e0b3fd2fee54c7f9a36f40e091638421f76d062683
 DIST chimera-1.8.1-linux_x86_64.bin 109033631 SHA256 39b21bdee683a6ea5b60c7e24f4723c5ca2febf419f4fa6adfb8f609c3e9d18c SHA512 3794e88de3a6fd1948fcf2be5a9512dfbdc11562125b2f6fcc57116f695ff0933a8d6c556ede3b94ab9d2e317f698c3ce1a5616aa8705e60a2a893f63007ecd5 WHIRLPOOL c2874cff46eb243d5b97e29bd16bf18ba07db514efd1653f3d2ddcab98e74dce0462c605141d0ecc1d7ad73fd0ffcb203035004d491ffc9bbfca8d14a3bd118f
+DIST chimera-1.9-linux.bin 114083133 SHA256 b9ea5def8692936bd8bdf2f7a4e0a34c0d4bfefb3c33cea1120459d9dde39902 SHA512 10f5550309a34c667c6af6ac11a62676f7320eb6fdd70e880fb5276893140a3f97d1eec7743248102f2e15316491564b1326526c2dee5c4d059929c5e4e45c38 WHIRLPOOL faeac184262c913bede52a5f8aa4636452c9de8bc006ce7c2eef54c225ad6b8df4ce62789f78970a7b5f5aca36fe1e29a0a27d7fe883d8f78529014cfd52a92c
+DIST chimera-1.9-linux_x86_64.bin 116013121 SHA256 f9b40b350ed034fd89f7e0b5ad1b7059745be2cff08263cd013c83c1b21fc23e SHA512 07a0c415d552452bb8e6b74818947fda4f1bc00b9ec7f421ea2f0b0731a27822a15f71126103651768cc34a5fd183f7828619886027df550b95740c8c0b50eff WHIRLPOOL bc522278af00a3d9fa826283870456b08090fd613645efde563b8937fe19117111b44bc42a1784e5e3aee4ef504caaed4c9412c0b91508e6bebe4f50d799e8bf
diff --git a/sci-chemistry/chimera-bin/chimera-bin-1.9.ebuild b/sci-chemistry/chimera-bin/chimera-bin-1.9.ebuild
new file mode 100644
index 000000000..07734d602
--- /dev/null
+++ b/sci-chemistry/chimera-bin/chimera-bin-1.9.ebuild
@@ -0,0 +1,94 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils
+
+DESCRIPTION="An extensible Molecular Modelling System"
+HOMEPAGE="http://www.cgl.ucsf.edu/chimera"
+SRC_URI="
+	amd64? ( chimera-${PV}-linux_x86_64.bin )
+	x86? ( chimera-${PV}-linux.bin )"
+
+SLOT="0"
+LICENSE="chimera"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+DEPEND="prefix? ( dev-util/patchelf )"
+RDEPEND="
+	dev-lang/tcl
+	dev-lang/tk
+	dev-libs/expat
+	dev-libs/libotf
+	dev-libs/openssl:0
+	dev-libs/libpcre
+	sys-libs/zlib
+	media-libs/fontconfig
+	media-libs/freetype
+	media-libs/ftgl
+	media-libs/libpng:1.2
+	media-libs/tiff
+	media-libs/tiff:3
+	sci-libs/hdf5
+	sys-devel/gcc[openmp,fortran]
+	virtual/jpeg
+	virtual/glu
+	virtual/opengl
+	www-apps/swish-e
+	x11-libs/libX11
+	x11-libs/libICE
+	x11-libs/libXext
+	x11-libs/libXft
+	x11-libs/libXmu
+	x11-libs/libXpm
+	x11-libs/libXrender
+	x11-libs/libSM
+	x11-libs/libXt
+	|| ( x11-libs/libGLw <media-libs/mesa-8 )"
+
+S="${WORKDIR}"
+
+RESTRICT="fetch strip"
+
+QA_PREBUILT="opt/.*"
+
+pkg_nofetch() {
+	elog "Please visit"
+	elog "http://www.cgl.ucsf.edu/chimera/download.html"
+	elog "and download ${A} into ${DISTDIR}"
+}
+
+src_unpack() {
+	cp "${DISTDIR}"/${A} ${A}.zip
+	unzip ${A}.zip || die
+}
+
+src_install() {
+	chmod +x ./chimera.bin
+	dodir /opt/
+	./chimera.bin -d foo || die
+	doicon foo/chimeraIcon.png
+	mv foo "${ED}/opt/${PN}" || die
+
+	cat >> "${T}"/chimera <<- EOF
+	#!${EPREFX}/bin/bash
+
+	export PATH="${EPREFIX}/opt/${PN}/bin:\${PATH}"
+	"${EPREFIX}/opt/${PN}/bin/chimera" \$@
+	EOF
+
+	exeinto /opt/bin/
+	doexe "${T}"/chimera
+
+	make_desktop_entry "${EPREFIX}/opt/bin/chimera" Chimera chimeraIcon
+
+	if use prefix; then
+		local i
+		for i in "${ED}"/opt/${PN}/bin/{tiffcp,povray,al2co} "${ED}"/opt/${PN}/lib/*.so; do
+			patchelf --set-rpath "${EPREFIX}/usr/lib:${EPREFIX}/opt/${PN}/lib" "${i}" || die
+		done
+	fi
+}