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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2016-03-30 20:34:40 +0200
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2016-03-30 20:34:40 +0200
commitda405712a90e0f4fb23ed51c93df1b65d62f9b49 (patch)
tree2c2269e013711d5c8d8f06081a6116199b133c75
parentsci-biology/reapr: new package with bundled samtools, bamtools, tabix (nowada... (diff)
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sci-biology/cap3-bin: fix version number to match version generated at runtime; added new version
Package-Manager: portage-2.2.28
-rw-r--r--sci-biology/cap3-bin/Manifest1
-rw-r--r--sci-biology/cap3-bin/cap3-bin-20071015.ebuild (renamed from sci-biology/cap3-bin/cap3-bin-20071221.ebuild)0
-rw-r--r--sci-biology/cap3-bin/cap3-bin-20150210.ebuild42
3 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/cap3-bin/Manifest b/sci-biology/cap3-bin/Manifest
index 2b535c029..940c7aed2 100644
--- a/sci-biology/cap3-bin/Manifest
+++ b/sci-biology/cap3-bin/Manifest
@@ -1,2 +1,3 @@
DIST cap3.linux.i686_xeon64.tar 430080 SHA256 fd7112a89dd349e0d11820d4bfab34c3556eb570828f71a8db18b68bd6aa1c2c SHA512 3f0f2434a5fcecf50a5ba0b5fe0400c9c6f1f0eeef860d1a7c84ba6ae266d44679a2bef8f12d24c295e2b1fa982354dc4c0aee48b07d8bb4a33e6e1eeaf974c3 WHIRLPOOL 8c0bb741b0a074f6b6a8b241f31224985954f46e63329a6c4b3ebd27190a9dcaa361a0269939ac453e2e3fe77917c31e3d06b0752defadebf64ec13a18d57de9
DIST cap3.linux.tar 409600 SHA256 49916f0ac2dc7b6f28fd88e79f98eb097e059839bd9311593ef3fc6f77bc4648 SHA512 3039d5c195b9e0358faf9038378b0a406eac944f7bdf8de8f0cb90e33bd73c6ee72c2f2aea62bfe520ae5a6b25c7c4abf7025d95cd997159092b3f44f513c6c6 WHIRLPOOL d3e5faa33766aca9180d5ebaeb09a580c179a47483468caa1986b7d5e238256335b1f89046c080c57dd5638e398b5273b72733ce395c6000963d3207171863b6
+DIST cap3.linux.x86_64.tar 450560 SHA256 3aff30423e052887925b32f31bdd76764406661f2be3750afbf46341c3d38a06 SHA512 aded71d9e613959d9b5f4326e4c6a7a7e6f6e6b6f0ec9c044e042caf7908bd218a37dcfacf217977d2b3be36425a9057b9d87e192536353be1a311cfbbb0397e WHIRLPOOL 58713649914d5941cb0fed294b9e8d2e431ee62e603af9025485e184243b217c83c8414921a703a2f9f7314bae486b750f47e9bff4069bb1f345ae92f73f4b9b
diff --git a/sci-biology/cap3-bin/cap3-bin-20071221.ebuild b/sci-biology/cap3-bin/cap3-bin-20071015.ebuild
index 987b0e04f..987b0e04f 100644
--- a/sci-biology/cap3-bin/cap3-bin-20071221.ebuild
+++ b/sci-biology/cap3-bin/cap3-bin-20071015.ebuild
diff --git a/sci-biology/cap3-bin/cap3-bin-20150210.ebuild b/sci-biology/cap3-bin/cap3-bin-20150210.ebuild
new file mode 100644
index 000000000..72f7bca0b
--- /dev/null
+++ b/sci-biology/cap3-bin/cap3-bin-20150210.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+DESCRIPTION="CAP3 is for small-scale assembly of EST sequences with or without quality value"
+HOMEPAGE="http://seq.cs.iastate.edu"
+# These exist currently and contain version 20071221:
+# http://seq.cs.iastate.edu/CAP3/cap3.linux.tar
+# http://seq.cs.iastate.edu/CAP3/cap3.linux.i686_xeon64.tar
+# http://seq.cs.iastate.edu/CAP3/cap3.linux.opteron64.tar
+
+# The /pub/ directory is gone although contained same version of binaries but for some different platforms:
+# http://seq.cs.iastate.edu/CAP3/cap3.linux.opteron64.tar
+# http://seq.cs.iastate.edu/CAP3/cap3.linux.i686_xeon64.taran old version (2009)
+
+SRC_URI="
+ x86? ( http://seq.cs.iastate.edu/CAP3/cap3.linux.tar )
+ amd64? ( http://seq.cs.iastate.edu/CAP3/cap3.linux.x86_64.tar )"
+
+LICENSE="Artistic"
+SLOT="0"
+KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+S="${WORKDIR}/CAP3"
+
+src_install() {
+ exeinto /opt/${PN}
+ doexe cap3 formcon
+ dosym ../${PN}/cap3 /opt/bin/cap3
+ dosym ../${PN}/formcon /opt/bin/formcon
+ dodoc README
+ newdoc doc.txt cap3.txt
+ newdoc aceform ACE_file_format.txt
+ # other examples
+ # http://seq.cs.iastate.edu/pub/CAP3/data.tar
+ dodir /usr/share/cap3/examples
+ insinto /usr/share/cap3
+ doins -r example
+}