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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-30 20:34:40 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-03-30 20:34:40 +0200 |
| commit | da405712a90e0f4fb23ed51c93df1b65d62f9b49 (patch) | |
| tree | 2c2269e013711d5c8d8f06081a6116199b133c75 | |
| parent | sci-biology/reapr: new package with bundled samtools, bamtools, tabix (nowada... (diff) | |
| download | sci-da405712a90e0f4fb23ed51c93df1b65d62f9b49.tar.gz sci-da405712a90e0f4fb23ed51c93df1b65d62f9b49.tar.bz2 sci-da405712a90e0f4fb23ed51c93df1b65d62f9b49.zip | |
sci-biology/cap3-bin: fix version number to match version generated at runtime; added new version
Package-Manager: portage-2.2.28
| -rw-r--r-- | sci-biology/cap3-bin/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/cap3-bin/cap3-bin-20071015.ebuild (renamed from sci-biology/cap3-bin/cap3-bin-20071221.ebuild) | 0 | ||||
| -rw-r--r-- | sci-biology/cap3-bin/cap3-bin-20150210.ebuild | 42 |
3 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/cap3-bin/Manifest b/sci-biology/cap3-bin/Manifest index 2b535c029..940c7aed2 100644 --- a/sci-biology/cap3-bin/Manifest +++ b/sci-biology/cap3-bin/Manifest @@ -1,2 +1,3 @@ DIST cap3.linux.i686_xeon64.tar 430080 SHA256 fd7112a89dd349e0d11820d4bfab34c3556eb570828f71a8db18b68bd6aa1c2c SHA512 3f0f2434a5fcecf50a5ba0b5fe0400c9c6f1f0eeef860d1a7c84ba6ae266d44679a2bef8f12d24c295e2b1fa982354dc4c0aee48b07d8bb4a33e6e1eeaf974c3 WHIRLPOOL 8c0bb741b0a074f6b6a8b241f31224985954f46e63329a6c4b3ebd27190a9dcaa361a0269939ac453e2e3fe77917c31e3d06b0752defadebf64ec13a18d57de9 DIST cap3.linux.tar 409600 SHA256 49916f0ac2dc7b6f28fd88e79f98eb097e059839bd9311593ef3fc6f77bc4648 SHA512 3039d5c195b9e0358faf9038378b0a406eac944f7bdf8de8f0cb90e33bd73c6ee72c2f2aea62bfe520ae5a6b25c7c4abf7025d95cd997159092b3f44f513c6c6 WHIRLPOOL d3e5faa33766aca9180d5ebaeb09a580c179a47483468caa1986b7d5e238256335b1f89046c080c57dd5638e398b5273b72733ce395c6000963d3207171863b6 +DIST cap3.linux.x86_64.tar 450560 SHA256 3aff30423e052887925b32f31bdd76764406661f2be3750afbf46341c3d38a06 SHA512 aded71d9e613959d9b5f4326e4c6a7a7e6f6e6b6f0ec9c044e042caf7908bd218a37dcfacf217977d2b3be36425a9057b9d87e192536353be1a311cfbbb0397e WHIRLPOOL 58713649914d5941cb0fed294b9e8d2e431ee62e603af9025485e184243b217c83c8414921a703a2f9f7314bae486b750f47e9bff4069bb1f345ae92f73f4b9b diff --git a/sci-biology/cap3-bin/cap3-bin-20071221.ebuild b/sci-biology/cap3-bin/cap3-bin-20071015.ebuild index 987b0e04f..987b0e04f 100644 --- a/sci-biology/cap3-bin/cap3-bin-20071221.ebuild +++ b/sci-biology/cap3-bin/cap3-bin-20071015.ebuild diff --git a/sci-biology/cap3-bin/cap3-bin-20150210.ebuild b/sci-biology/cap3-bin/cap3-bin-20150210.ebuild new file mode 100644 index 000000000..72f7bca0b --- /dev/null +++ b/sci-biology/cap3-bin/cap3-bin-20150210.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +DESCRIPTION="CAP3 is for small-scale assembly of EST sequences with or without quality value" +HOMEPAGE="http://seq.cs.iastate.edu" +# These exist currently and contain version 20071221: +# http://seq.cs.iastate.edu/CAP3/cap3.linux.tar +# http://seq.cs.iastate.edu/CAP3/cap3.linux.i686_xeon64.tar +# http://seq.cs.iastate.edu/CAP3/cap3.linux.opteron64.tar + +# The /pub/ directory is gone although contained same version of binaries but for some different platforms: +# http://seq.cs.iastate.edu/CAP3/cap3.linux.opteron64.tar +# http://seq.cs.iastate.edu/CAP3/cap3.linux.i686_xeon64.taran old version (2009) + +SRC_URI=" + x86? ( http://seq.cs.iastate.edu/CAP3/cap3.linux.tar ) + amd64? ( http://seq.cs.iastate.edu/CAP3/cap3.linux.x86_64.tar )" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="~x86 ~amd64" +IUSE="" + +S="${WORKDIR}/CAP3" + +src_install() { + exeinto /opt/${PN} + doexe cap3 formcon + dosym ../${PN}/cap3 /opt/bin/cap3 + dosym ../${PN}/formcon /opt/bin/formcon + dodoc README + newdoc doc.txt cap3.txt + newdoc aceform ACE_file_format.txt + # other examples + # http://seq.cs.iastate.edu/pub/CAP3/data.tar + dodir /usr/share/cap3/examples + insinto /usr/share/cap3 + doins -r example +} |