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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-04-15 02:11:55 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2017-04-15 02:11:55 +0200 |
| commit | dd7e564441676f8fbce36c262cb15aa865f5b545 (patch) | |
| tree | 6e7a28c912c5ab2a5e6ade7f89c4f55e499962c8 | |
| parent | sci-libs/io_lib: version bump, support for alternative zlib implementations (diff) | |
| download | sci-dd7e564441676f8fbce36c262cb15aa865f5b545.tar.gz sci-dd7e564441676f8fbce36c262cb15aa865f5b545.tar.bz2 sci-dd7e564441676f8fbce36c262cb15aa865f5b545.zip | |
sci-biology/flexbar: version bump, added KEYWORDS
We still could filter away '-Wl,-O1' from CXXFLAGS.
Package-Manager: Portage-2.3.5, Repoman-2.3.2
| -rw-r--r-- | sci-biology/flexbar/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/flexbar/flexbar-3.0.0.ebuild | 41 |
2 files changed, 42 insertions, 0 deletions
diff --git a/sci-biology/flexbar/Manifest b/sci-biology/flexbar/Manifest index 4493b8c57..9711db441 100644 --- a/sci-biology/flexbar/Manifest +++ b/sci-biology/flexbar/Manifest @@ -1 +1,2 @@ DIST flexbar-2.7.0.tar.gz 30033 SHA256 8b44a16594e8a2f68d33acbcfdbfb0a017d2a6dc69cc65259b199ad94ea0f0e6 SHA512 38dc40476dadd769977dd2428941928e839e107e719e9b595c2ba57e1d8764fb394c5960b809da99dc939a66cae9350ea607e393b9467e98d464d0e49bcdac47 WHIRLPOOL da45d9bb8080ef7913324875dd0f8ac4a6f182337da1c217eaf9894ced407f78ff10637b62981466ad0cc2c4dde25d6d1d5235480112ebe67e7a21053b699247 +DIST flexbar-3.0.0.tar.gz 31292 SHA256 60226d62d9617a7026bdae4b6f5f695ac2bc839b7d19e1d7d9ab63f85aa31a74 SHA512 ccefb4d1342ce5353a64510f79f8b15c409eb68853eb98ed7c9b23cb53d926e5b6965b1a9d3d8a5b3699da2f18cf8a627d5ca3ed172e25693a80d878547d6d38 WHIRLPOOL fa341bad342e87edd697049b84ee368a895bef2ccc445b2d730d70a720ea3ce0c5170a3d9b793760c9a6e3762c451b971f8e28a4ba006335d6c4354d83cead3a diff --git a/sci-biology/flexbar/flexbar-3.0.0.ebuild b/sci-biology/flexbar/flexbar-3.0.0.ebuild new file mode 100644 index 000000000..65f5dd077 --- /dev/null +++ b/sci-biology/flexbar/flexbar-3.0.0.ebuild @@ -0,0 +1,41 @@ +# Copyright 1999-2017 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 + +EAPI=6 + +inherit cmake-utils + +DESCRIPTION="Barcode, MID tag and adapter sequence removal" +HOMEPAGE="https://github.com/seqan/flexbar" +SRC_URI="https://github.com/seqan/flexbar/archive/v${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +CDEPEND=" + dev-cpp/tbb + >=sci-biology/seqan-2.1.1:0 + sys-libs/zlib + app-arch/bzip2" +DEPEND="${CDEPEND}" +RDEPEND="${CDEPEND}" + +# TODO: need to call 'pkg-config --cflags seqan-2.2' and pass it down +src_configure() { + local CPPFLAGS=${CPPFLAGS} + append-cppflags `pkg-config --cflags seqan-2.2` + local CXXFLAGS="${CXXFLAGS}" + append-cxxflags "-std=c++14" + cmake-utils_src_configure +} + +# SeqAn requires C++14! You must compile your application with -std=c++14, -std=gnu++14 or -std=c++1y +# https://github.com/seqan/flexbar/issues/8 + +src_install(){ + elog `pwd` + dobin ../"${P}"_build/flexbar + dodoc ../"${P}"/README.md +} |