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author | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-10 13:37:39 +0100 |
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committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-01-10 13:37:39 +0100 |
commit | de9721d49c6afc097ae9e0b20a098a8f2edb811a (patch) | |
tree | 9efd4e65ed2d2aa84e136efcf53e35b0785e6260 | |
parent | profiles/package.mask unmask NGSEPcore-bin: fixed (diff) | |
download | sci-de9721d49c6afc097ae9e0b20a098a8f2edb811a.tar.gz sci-de9721d49c6afc097ae9e0b20a098a8f2edb811a.tar.bz2 sci-de9721d49c6afc097ae9e0b20a098a8f2edb811a.zip |
sci-biology/NGSEPplugins: obsolete, replaced by guifx
need eclipse-sdk, which is not packaged in ::gentoo yet
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
-rw-r--r-- | sci-biology/NGSEPplugin-bin/Manifest | 1 | ||||
-rw-r--r-- | sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild | 28 | ||||
-rw-r--r-- | sci-biology/NGSEPplugin-bin/metadata.xml | 15 | ||||
-rw-r--r-- | sci-biology/NGSEPplugin/Manifest | 1 | ||||
-rw-r--r-- | sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild | 36 | ||||
-rw-r--r-- | sci-biology/NGSEPplugin/metadata.xml | 15 |
6 files changed, 0 insertions, 96 deletions
diff --git a/sci-biology/NGSEPplugin-bin/Manifest b/sci-biology/NGSEPplugin-bin/Manifest deleted file mode 100644 index 32b7ad470..000000000 --- a/sci-biology/NGSEPplugin-bin/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST NGSEPplugin_3.3.1.201903140636.jar 4265549 BLAKE2B 016142b652f8cea94e6206d014b4f193b8b59dd277ce82d5a927f18b6826e4c702f5594c9379db5664a8b4e3ba5aac87c6e100ec1c0990c349cea3ca178d5321 SHA512 b0e008cb1fcca6925be681679f64f6dc8f4de5362d126ebce637f9ac533b7e90123d9167b73050971623cd3b512df66fbab79f1df0e4bfef0c4c9651de157844 diff --git a/sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild b/sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild deleted file mode 100644 index f2a452138..000000000 --- a/sci-biology/NGSEPplugin-bin/NGSEPplugin-bin-3.3.1.ebuild +++ /dev/null @@ -1,28 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="NGSEP with Eclipse Plugin (CNV and indel discovery)" -HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home - https://github.com/NGSEP/NGSEPplugin" -SRC_URI="https://sourceforge.net/projects/ngsep/files/OnlyPlugin/NGSEPplugin_3.3.1.201903140636.jar" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND=" - >=virtual/jdk-1.7:* - sci-biology/NGSEPcore-bin" -RDEPEND="${DEPEND} - >=virtual/jre-1.7:*" - -S="${WORKDIR}" - -src_install(){ - java-pkg_dojar "${DISTDIR}"/*.jar -} diff --git a/sci-biology/NGSEPplugin-bin/metadata.xml b/sci-biology/NGSEPplugin-bin/metadata.xml deleted file mode 100644 index 642261079..000000000 --- a/sci-biology/NGSEPplugin-bin/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">ngsep</remote-id> - </upstream> -</pkgmetadata> diff --git a/sci-biology/NGSEPplugin/Manifest b/sci-biology/NGSEPplugin/Manifest deleted file mode 100644 index 6ea8d998a..000000000 --- a/sci-biology/NGSEPplugin/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST NGSEPplugin_3.3.1.tar.gz 7663802 BLAKE2B 2d61a7122c87059b585ea87017561c5bb258eaa4280322421edce4e378f50e56123cea71c222666e3976a1bf22ca52a7ef52831f3df2a93f40c74617cfb893c9 SHA512 5ac0bf0e4a24fb460eb884b9d5d522f546c920755135edf03f8d6a4489f677220754617a7985e45ec85333faa77c1cdd704c579469f7a88a1f11d39cb0c1ba6a diff --git a/sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild b/sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild deleted file mode 100644 index 736121efb..000000000 --- a/sci-biology/NGSEPplugin/NGSEPplugin-3.3.1.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2020 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit java-pkg-2 java-ant-2 - -DESCRIPTION="NGSEP with Eclipse Plugin (CNV and indel discovery)" -HOMEPAGE="https://sourceforge.net/p/ngsep/wiki/Home - https://github.com/NGSEP/NGSEPplugin" -SRC_URI="https://sourceforge.net/projects/ngsep/files/SourceCode/NGSEPplugin_${PV}.tar.gz" - -LICENSE="GPL-3" -SLOT="0" -KEYWORDS="" -IUSE="" - -DEPEND=" - >=virtual/jdk-1.7:* - dev-java/jcommon - dev-util/eclipse-sdk - dev-java/htsjdk - sci-biology/NGSEPcore" -RDEPEND="${DEPEND} - >=virtual/jre-1.7:*" - -S="${WORKDIR}/${PN}_${PV}" - -src_prepare(){ - rm -f lib/NGSEPcore_3.3.1.jar lib/SortSam.jar lib/jcommon-1.0.17.jar lib/xchart-2.4.2.jar || die - default -} - -src_install(){ - java-pkg_dojar *.jar -} diff --git a/sci-biology/NGSEPplugin/metadata.xml b/sci-biology/NGSEPplugin/metadata.xml deleted file mode 100644 index 642261079..000000000 --- a/sci-biology/NGSEPplugin/metadata.xml +++ /dev/null @@ -1,15 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="person"> - <email>mmokrejs@fold.natur.cuni.cz</email> - <name>Martin Mokrejs</name> - </maintainer> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> - <upstream> - <remote-id type="sourceforge">ngsep</remote-id> - </upstream> -</pkgmetadata> |