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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-04-10 23:21:00 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2016-04-10 23:21:00 +0200 |
| commit | e13abc54d0a4bb65bdb67109fbe1ee61f401cf88 (patch) | |
| tree | cd751f84d75db46be7293e6f662f406189f1ff87 | |
| parent | sci-biology/oases: new package (diff) | |
| download | sci-e13abc54d0a4bb65bdb67109fbe1ee61f401cf88.tar.gz sci-e13abc54d0a4bb65bdb67109fbe1ee61f401cf88.tar.bz2 sci-e13abc54d0a4bb65bdb67109fbe1ee61f401cf88.zip | |
sci-biology/megahit: new package
Package-Manager: portage-2.2.28
| -rw-r--r-- | sci-biology/megahit/megahit-9999.ebuild | 34 | ||||
| -rw-r--r-- | sci-biology/megahit/metadata.xml | 12 |
2 files changed, 46 insertions, 0 deletions
diff --git a/sci-biology/megahit/megahit-9999.ebuild b/sci-biology/megahit/megahit-9999.ebuild new file mode 100644 index 000000000..def7fd6e0 --- /dev/null +++ b/sci-biology/megahit/megahit-9999.ebuild @@ -0,0 +1,34 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +inherit git-r3 toolchain-funcs + +DESCRIPTION="Metagenome assembler using succinct de Bruijn graph approach with CUDA" +HOMEPAGE="https://github.com/voutcn/megahit + http://bioinformatics.oxfordjournals.org/content/31/10/1674.abstract" +EGIT_REPO_URI="https://github.com/voutcn/megahit.git" + +LICENSE="GPL-3" +SLOT="0" +KEYWORDS="" +IUSE="+openmp" + +DEPEND="" +RDEPEND="${DEPEND} + sys-libs/zlib" +# >=gcc-4.4 + +# use make use_gpu=1 to compile it and turn on --use-gpu to activate GPU acceleration when running megahit + +src_prepare(){ + default + sed -e "s#^CXXFLAGS = -g -O2#CXXFLAGS = ${CFLAGS}#" -i Makefile || die +} + +src_install(){ + dobin megahit megahit_toolkit megahit_sdbg_build megahit_asm_core + dodoc README.md +} diff --git a/sci-biology/megahit/metadata.xml b/sci-biology/megahit/metadata.xml new file mode 100644 index 000000000..f68a1b6fa --- /dev/null +++ b/sci-biology/megahit/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer type="person"> + <email>mmokrejs@fold.natur.cuni.cz</email> + <name>Martin Mokrejs</name> + </maintainer> + <maintainer type="project"> + <email>sci-biology@gentoo.org</email> + <name>Gentoo Biology Project</name> + </maintainer> +</pkgmetadata> |