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authorMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2018-01-08 15:11:10 +0100
committerMartin Mokrejš <mmokrejs@fold.natur.cuni.cz>2018-01-08 15:11:10 +0100
commite506aabb717f6536e683c88a998e7b566aab8164 (patch)
tree8f51f4e917ef6d8322a4b0ba07217f3721b3c9ca
parentsci-biology/augustus: version bump (diff)
downloadsci-e506aabb717f6536e683c88a998e7b566aab8164.zip
sci-e506aabb717f6536e683c88a998e7b566aab8164.tar.gz
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sci-biology/BRAKER: version bump
Package-Manager: Portage-2.3.19, Repoman-2.3.6
-rw-r--r--sci-biology/BRAKER/BRAKER-2.ebuild (renamed from sci-biology/BRAKER/BRAKER-1.9.ebuild)6
-rw-r--r--sci-biology/BRAKER/Manifest2
2 files changed, 4 insertions, 4 deletions
diff --git a/sci-biology/BRAKER/BRAKER-1.9.ebuild b/sci-biology/BRAKER/BRAKER-2.ebuild
index 7c81476..b4c7524 100644
--- a/sci-biology/BRAKER/BRAKER-1.9.ebuild
+++ b/sci-biology/BRAKER/BRAKER-2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
@@ -10,7 +10,7 @@ DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS"
# http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf
HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker
http://bioinf.uni-greifswald.de/augustus/downloads"
-SRC_URI=" http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1_v"${PV}".tar.gz -> ${P}.tar.gz"
+SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER"${PV}".tar.gz -> ${P}.tar.gz"
# Download BRAKER1 from http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz.
# The most recent release is version 1.8, from December 15th 2015.
# Example data for testing the BRAKER1 pipeline is available at
@@ -31,7 +31,7 @@ RDEPEND="${DEPEND}
# this causes:
# [blocks B ] <perl-core/Scalar-List-Utils-1.380.0 ("<perl-core/Scalar-List-Utils-1.380.0" is blocking virtual/perl-Scalar-List-Utils-1.380.0)
-S="${WORKDIR}"/BRAKER_v"${PV}"
+S="${WORKDIR}"/BRAKER_v"${PV}".0
src_prepare(){
sed -e 's/^use helpMod/use BRAKER::helpMod/' -i braker.pl || die
diff --git a/sci-biology/BRAKER/Manifest b/sci-biology/BRAKER/Manifest
index 2e35a53..e2c4ea4 100644
--- a/sci-biology/BRAKER/Manifest
+++ b/sci-biology/BRAKER/Manifest
@@ -1 +1 @@
-DIST BRAKER-1.9.tar.gz 32183 SHA256 41151efadba460b370c1a974d02f9db0d6d4d0d4dd69b0badb574cb085192275 SHA512 25603ce53ffa68d02cda3bee6c8438322d42f3987f5c6f98fcd9ba85b54b361ba11e3aad6ec0ec50493d90f5b3d726c2a475117be95aa01dd7b123769d5d8338 WHIRLPOOL 79d3f8a6e14e2d5848585f90490778ae5106dde123556f95cbc2161b0f51ef15d8781828f524b3ccf4b6f96b4d265817093ccf36a6d8f289e24b278d2c5955a7
+DIST BRAKER-2.tar.gz 56198 BLAKE2B 7433cfde0c0fd6b7335061d8cfb90e1e17d9a258b60ca0b88f2b222216566e11834129e3db9df85043137975b12343c4b4c2e9e835c3abf43d36af8075488f07 SHA512 67da52604a7269a45128bc2a226a3103d89ff3737aaf0126e231b3af3bc2d94f590927d58b1de03caf8d962f3691270c93be5d60d56f393f8bfd70c196b4bb02