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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-08 15:11:10 +0100 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2018-01-08 15:11:10 +0100 |
| commit | e506aabb717f6536e683c88a998e7b566aab8164 (patch) | |
| tree | 8f51f4e917ef6d8322a4b0ba07217f3721b3c9ca | |
| parent | sci-biology/augustus: version bump (diff) | |
| download | sci-e506aabb717f6536e683c88a998e7b566aab8164.tar.gz sci-e506aabb717f6536e683c88a998e7b566aab8164.tar.bz2 sci-e506aabb717f6536e683c88a998e7b566aab8164.zip | |
sci-biology/BRAKER: version bump
Package-Manager: Portage-2.3.19, Repoman-2.3.6
| -rw-r--r-- | sci-biology/BRAKER/BRAKER-2.ebuild (renamed from sci-biology/BRAKER/BRAKER-1.9.ebuild) | 6 | ||||
| -rw-r--r-- | sci-biology/BRAKER/Manifest | 2 |
2 files changed, 4 insertions, 4 deletions
diff --git a/sci-biology/BRAKER/BRAKER-1.9.ebuild b/sci-biology/BRAKER/BRAKER-2.ebuild index 7c814763f..b4c752457 100644 --- a/sci-biology/BRAKER/BRAKER-1.9.ebuild +++ b/sci-biology/BRAKER/BRAKER-2.ebuild @@ -1,4 +1,4 @@ -# Copyright 1999-2016 Gentoo Foundation +# Copyright 1999-2018 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 EAPI=5 @@ -10,7 +10,7 @@ DESCRIPTION="Gene prediction based on RNA-Seq using GeneMark-ET and AUGUSTUS" # http://bioinf.uni-greifswald.de/bioinf/publications/pag2015.pdf HOMEPAGE="http://bioinf.uni-greifswald.de/bioinf/braker http://bioinf.uni-greifswald.de/augustus/downloads" -SRC_URI=" http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1_v"${PV}".tar.gz -> ${P}.tar.gz" +SRC_URI="http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER"${PV}".tar.gz -> ${P}.tar.gz" # Download BRAKER1 from http://bioinf.uni-greifswald.de/augustus/binaries/BRAKER1.tar.gz. # The most recent release is version 1.8, from December 15th 2015. # Example data for testing the BRAKER1 pipeline is available at @@ -31,7 +31,7 @@ RDEPEND="${DEPEND} # this causes: # [blocks B ] <perl-core/Scalar-List-Utils-1.380.0 ("<perl-core/Scalar-List-Utils-1.380.0" is blocking virtual/perl-Scalar-List-Utils-1.380.0) -S="${WORKDIR}"/BRAKER_v"${PV}" +S="${WORKDIR}"/BRAKER_v"${PV}".0 src_prepare(){ sed -e 's/^use helpMod/use BRAKER::helpMod/' -i braker.pl || die diff --git a/sci-biology/BRAKER/Manifest b/sci-biology/BRAKER/Manifest index 2e35a5331..e2c4ea415 100644 --- a/sci-biology/BRAKER/Manifest +++ b/sci-biology/BRAKER/Manifest @@ -1 +1 @@ -DIST BRAKER-1.9.tar.gz 32183 SHA256 41151efadba460b370c1a974d02f9db0d6d4d0d4dd69b0badb574cb085192275 SHA512 25603ce53ffa68d02cda3bee6c8438322d42f3987f5c6f98fcd9ba85b54b361ba11e3aad6ec0ec50493d90f5b3d726c2a475117be95aa01dd7b123769d5d8338 WHIRLPOOL 79d3f8a6e14e2d5848585f90490778ae5106dde123556f95cbc2161b0f51ef15d8781828f524b3ccf4b6f96b4d265817093ccf36a6d8f289e24b278d2c5955a7 +DIST BRAKER-2.tar.gz 56198 BLAKE2B 7433cfde0c0fd6b7335061d8cfb90e1e17d9a258b60ca0b88f2b222216566e11834129e3db9df85043137975b12343c4b4c2e9e835c3abf43d36af8075488f07 SHA512 67da52604a7269a45128bc2a226a3103d89ff3737aaf0126e231b3af3bc2d94f590927d58b1de03caf8d962f3691270c93be5d60d56f393f8bfd70c196b4bb02 |