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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 12:00:08 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-02-01 12:00:08 +0100 |
| commit | effb881f64d5b18a2b2d05e9a28f3d54f9a0b484 (patch) | |
| tree | 499741969b0605e4b70c20f9e225c2c00f567fed | |
| parent | sci-biology/cramtools: EAPI bump, fix install, add keywords (diff) | |
| download | sci-effb881f64d5b18a2b2d05e9a28f3d54f9a0b484.tar.gz sci-effb881f64d5b18a2b2d05e9a28f3d54f9a0b484.tar.bz2 sci-effb881f64d5b18a2b2d05e9a28f3d54f9a0b484.zip | |
sci-biology/jigsaw: define correct compile and install phases
compilation itself fails, this needs a patch
Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
| -rw-r--r-- | sci-biology/jigsaw/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/jigsaw/jigsaw-3.2.10.ebuild | 13 | ||||
| -rw-r--r-- | sci-biology/jigsaw/jigsaw-3.2.10m.ebuild | 28 |
3 files changed, 29 insertions, 14 deletions
diff --git a/sci-biology/jigsaw/Manifest b/sci-biology/jigsaw/Manifest index 6f8a181f3..1fcded0c0 100644 --- a/sci-biology/jigsaw/Manifest +++ b/sci-biology/jigsaw/Manifest @@ -1 +1 @@ -DIST jigsaw-3.2.10.tar.gz 1033424 BLAKE2B 9a254e47f32629e3613938aa0430b844ecefedf375e5a6585870f9b3a452842a7445234e190a59df2f65a2d2123c0973ba9b48ba3f0fea071f42fd2e01e683f4 SHA512 dfce29afd91603e328da6dcbb65851674f7c396746c8091e3bd81bfb06433404b1d87778f75dfaf683eafc9736e6bd7d91e48ac4c51198bf6bdcae68457ba05f +DIST jigsaw-3.2.10m.tar.gz 1024885 BLAKE2B 59b98b3e8469b84fcb8bdceadc0cef3a628bf5b1e059af905a07b89de29a686aa66c20c451308bd980b8daba4e9c1ff0ec953b56a58d926ef626e1f4ee8b1a48 SHA512 5d19e933b5c9f2c57cb73a56a9017e5c088ce0135c2899caf21f2b9c0f092c35673b96be918e73f5fdb1c641dce853123e8f9d5592a64ac8704c28314b2d7877 diff --git a/sci-biology/jigsaw/jigsaw-3.2.10.ebuild b/sci-biology/jigsaw/jigsaw-3.2.10.ebuild deleted file mode 100644 index 47ef93f7f..000000000 --- a/sci-biology/jigsaw/jigsaw-3.2.10.ebuild +++ /dev/null @@ -1,13 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -DESCRIPTION="Combine results from external gene predictors into final gene models" -HOMEPAGE="http://www.cbcb.umd.edu/software/jigsaw" -SRC_URI="http://cbcb.umd.edu/software/jigsaw/${P}.tar.gz" - -LICENSE="Artistic" -SLOT="0" -KEYWORDS="" -IUSE="" diff --git a/sci-biology/jigsaw/jigsaw-3.2.10m.ebuild b/sci-biology/jigsaw/jigsaw-3.2.10m.ebuild new file mode 100644 index 000000000..1a78ae08e --- /dev/null +++ b/sci-biology/jigsaw/jigsaw-3.2.10m.ebuild @@ -0,0 +1,28 @@ +# Copyright 1999-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +DESCRIPTION="Combine results from external gene predictors into final gene models" +HOMEPAGE="https://www.cbcb.umd.edu/software/jigsaw" +SRC_URI="https://www.cbcb.umd.edu/software/jigsaw/${P}.tar.gz" + +LICENSE="Artistic" +SLOT="0" +KEYWORDS="" + +S="${WORKDIR}/${PN}-${PV//m}" + +src_compile() { + cd src/main || die + emake + cd ../../lib/oc1 + emake +} + +src_install() { + cd src/main || die + emake DESTDIR="${ED}" install + cd ../../lib/oc1 + emake DESTDIR="${ED}" install +} |