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| author |   Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-06-10 15:27:42 +0200 |
|---|---|---|
| committer | Martin Mokrejš <mmokrejs@fold.natur.cuni.cz> | 2015-06-10 15:27:42 +0200 |
| commit | f88203259ef0c27caa76cf104f4bf851f6e012d0 (patch) | |
| tree | 86e9d0f1a5fa3ad27716f3bbaf6e818c29f77e26 | |
| parent | a skeleton for a java package (diff) | |
| download | sci-f88203259ef0c27caa76cf104f4bf851f6e012d0.tar.gz sci-f88203259ef0c27caa76cf104f4bf851f6e012d0.tar.bz2 sci-f88203259ef0c27caa76cf104f4bf851f6e012d0.zip | |
add dependency on jhdf5; more ebuild cleanup
Package-Manager: portage-2.2.18
| -rw-r--r-- | sci-biology/fastqc/ChangeLog | 4 | ||||
| -rw-r--r-- | sci-biology/fastqc/fastqc-0.11.3.ebuild | 7 |
2 files changed, 8 insertions, 3 deletions
diff --git a/sci-biology/fastqc/ChangeLog b/sci-biology/fastqc/ChangeLog index 3510855fa..0e247b8ac 100644 --- a/sci-biology/fastqc/ChangeLog +++ b/sci-biology/fastqc/ChangeLog @@ -2,6 +2,10 @@ # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 # $Header: $ + 10 Jun 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> + fastqc-0.11.3.ebuild: + add dependency on jhdf5; more ebuild cleanup + *fastqc-0.11.3 (30 May 2015) 30 May 2015; Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> diff --git a/sci-biology/fastqc/fastqc-0.11.3.ebuild b/sci-biology/fastqc/fastqc-0.11.3.ebuild index d2ae40e59..d934cae6b 100644 --- a/sci-biology/fastqc/fastqc-0.11.3.ebuild +++ b/sci-biology/fastqc/fastqc-0.11.3.ebuild @@ -16,6 +16,7 @@ KEYWORDS="" IUSE="" DEPEND="sci-biology/picard + sci-libs/jhdf5 >=virtual/jre-1.5:*" RDEPEND="${DEPEND} dev-lang/perl @@ -29,7 +30,7 @@ src_prepare(){ } src_compile(){ - ant build || die # TODO: this does not work somehow + ant || die } src_install(){ @@ -38,6 +39,6 @@ src_install(){ # TODO: need to compile java in uk/ac/babraham/FastQC/ # and decide whether jbzip2-0.9.jar is a standard java lib or not - # ignore the sam-1.103.jar, that is likely library already in sci-biology/picard - # cisd-jhdf5.jar + # ignore the sam-1.103.jar and rely on /usr/share/picard/lib/sam.jar from sci-biology/picard + # cisd-jhdf5.jar should be provided by sci-libs/jhdf5 } |